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AT4G17180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1); Has 2802 Blast hits to 2733 proteins in 160 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 65; Plants - 2718; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17180-MONOMERCAZy:CBM43CAZy:GH17eggNOG:ENOG410IFW5
eggNOG:ENOG410Y907EMBL:AK117424EMBL:CP002687EnsemblPlants:AT4G17180
EnsemblPlants:AT4G17180.1entrez:827429Gene3D:3.20.20.80GeneID:827429
GO:GO:0004553GO:GO:0005975Gramene:AT4G17180.1hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF11InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT4G17180OMA:MVNLQQSPfam:PF00332
Pfam:PF07983PhylomeDB:Q8GYS2PROSITE:PS00587Proteomes:UP000006548
RefSeq:NP_193451.2scanprosite:PS00587SMART:SM00768SMR:Q8GYS2
SUPFAM:SSF51445TAIR:AT4G17180UniGene:At.33015UniProt:Q8GYS2
Coordinates (TAIR10) chr4:+:9646541..9648045
Molecular Weight (calculated) 51814.00 Da
IEP (calculated) 6.04
GRAVY (calculated) 0.01
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSGVGVALF ALSLLLVSHE VESAIGVNWG TLSFHKMRPS TVVDLLKANK ITKVKLFDAN PDALRALMGT GIQVMIGIPN EMLSTFNSDL FVQQNLSRFI
101: GKNGADIRYV AVGNEPFLTG YGGQFQNYVV PTMVNLQQSL VRANLASYVK LVVPCNADAY QSNVPSQGMF RPELTQIMTQ LVSFLNSNGS PFVVNIYPFL
201: SLYGNSDFPQ DYAFFEGSSH PVPDGPNTYY NAFDGNFDTL VAALTKLGYG QMPIVIGEIG WPTDGAVGAN LTAARVFNQG LISHVLSNKG TPLRPGSPPA
301: DVYLFGLLDE GAKSTLPGNF ERHWGIFSFD GQAKYRLNLG LGNRGLKNAK NVQYLPSRWC VAHPSRDMTQ VGDHLRLACS EADCTTLNDG GSCSQLGEKD
401: NISYAFNSYY QMQMQHEKSC DFDGLGMVTF LDPSVGDCRF LVGVTDIGLS SSTEPMARWS IYHICIGLLI WTLTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)