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AT4G13170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L13 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT5G48760.2); Has 1983 Blast hits to 1983 proteins in 630 species: Archae - 297; Bacteria - 430; Metazoa - 343; Fungi - 199; Plants - 322; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0102eggNOG:KOG3204EMBL:AL049751EMBL:AL161535
EMBL:AY052263EMBL:AY060518EMBL:CP002687EnsemblPlants:AT4G13170
EnsemblPlants:AT4G13170.1entrez:826931Gene3D:3.90.1180.10GeneID:826931
Genevisible:Q9SVR0GO:GO:0003735GO:GO:0006412GO:GO:0016020
GO:GO:0022625Gramene:AT4G13170.1HAMAP:MF_01366hmmpanther:PTHR11545
hmmpanther:PTHR11545:SF3HOGENOM:HOG000225289InParanoid:Q9SVR0InterPro:IPR005755
InterPro:IPR005822InterPro:IPR023563InterPro:IPR023564iPTMnet:Q9SVR0
KEGG:ath:AT4G13170KO:K02872OMA:NVESKIAPANTHER:PTHR11545
PANTHER:PTHR11545:SF3PaxDb:Q9SVR0Pfam:PF00572Pfam:Q9SVR0
PhylomeDB:Q9SVR0PIR:T07697PRIDE:Q9SVR0PRO:PR:Q9SVR0
PROSITE:PS00783ProteinModelPortal:Q9SVR0Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_193053.1scanprosite:PS00783SMR:Q9SVR0
STRING:3702.AT4G13170.1SUPFAM:SSF52161TAIR:AT4G13170TIGRfam:TIGR01077
TIGRFAMs:TIGR01077UniGene:At.3259UniProt:Q9SVR0
Coordinates (TAIR10) chr4:-:7655133..7656542
Molecular Weight (calculated) 23630.50 Da
IEP (calculated) 11.06
GRAVY (calculated) -0.48
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSGSGICAK RVVVDGRHHM LGRLASNTAK ELLNGQEVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGIPPPYDKI KRMVIPDALK VLRLQSGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERSQ VMYERKKQLN KLRTKAEKVA EERLGSQLDV
201: LAPVKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)