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AT4G11630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L19 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT5G11750.1); Has 7944 Blast hits to 7944 proteins in 2668 species: Archae - 0; Bacteria - 5364; Metazoa - 112; Fungi - 56; Plants - 151; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0335eggNOG:KOG1698EMBL:AK221452EMBL:AL049500
EMBL:AL161532EMBL:BT012188EMBL:CP002687EnsemblPlants:AT4G11630
EnsemblPlants:AT4G11630.1entrez:826768GeneID:826768GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT4G11630.1hmmpanther:PTHR15680
hmmpanther:PTHR15680:SF9HOGENOM:HOG000016266InterPro:IPR001857InterPro:IPR008991
KEGG:ath:AT4G11630OMA:CGSWSENPANTHER:PTHR15680Pfam:PF01245
PhylomeDB:Q9T0D0PIR:T04210PRINTS:PR00061Proteomes:UP000006548
RefSeq:NP_192900.1SMR:Q9T0D0STRING:3702.AT4G11630.1SUPFAM:SSF50104
TAIR:AT4G11630TIGRfam:TIGR01024TIGRFAMs:TIGR01024UniGene:At.33552
UniProt:Q9T0D0
Coordinates (TAIR10) chr4:+:7019793..7021068
Molecular Weight (calculated) 25415.80 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.45
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSIRGSTRL LQRHRFSISN TLRFTSSSSC GSWSENESRK LGFDSCPSSR AATYLISSLK NAGFSSSAIP KQNFTYASRC FSTTGDSSVQ GSPESDCVVP
101: QRIKFKRLDK TAKHIMQIVD KEAVEEVRSL REIPEIKPGY IVQLKVEVPE NKRRVSIVKG VVIARRNAGL NSTFRIRRLV AGVGVESMFP LYSPNLREIK
201: VVDKKKVRRA KLYYLRDKVN ALKKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)