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AT4G06744.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19320.1); Has 45026 Blast hits to 12967 proteins in 516 species: Archae - 11; Bacteria - 711; Metazoa - 1155; Fungi - 115; Plants - 40928; Viruses - 0; Other Eukaryotes - 2106 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVBAeggNOG:ENOG410YFAFEMBL:AB073166EMBL:CP002687
EnsemblPlants:AT4G06744EnsemblPlants:AT4G06744.1entrez:826147Gene3D:3.80.10.10
GeneID:826147GO:GO:0005576Gramene:AT4G06744.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF167HOGENOM:HOG000239260InParanoid:Q8W3M4InterPro:IPR032675
iPTMnet:Q8W3M4KEGG:ath:AT4G06744OMA:WIGSDICPaxDb:Q8W3M4
Pfam:Q8W3M4PhylomeDB:Q8W3M4PRIDE:Q8W3M4PRO:PR:Q8W3M4
ProteinModelPortal:Q8W3M4Proteomes:UP000006548RefSeq:NP_849339.1SMR:Q8W3M4
STRING:3702.AT4G06744.1SUPFAM:SSF52058TAIR:AT4G06744UniGene:At.47251
UniProt:Q8W3M4
Coordinates (TAIR10) chr4:-:4070870..4072084
Molecular Weight (calculated) 44621.90 Da
IEP (calculated) 6.50
GRAVY (calculated) 0.16
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNHLLLALF LVGTIALPDR GTQQLTNDGL TGARREILSF LDQRLAVVYP VIQRFKSLIT LDPYNVTKTW IGSDICSYRG FHCDNPPHNK TAVTVASIDF
101: NGFQLSAPSI EGFIDQFADL ALFHVNSNNF GGTVPSKIVN LRYLYELDIS NNRFTGQFPT AVVGMSGLTF IDIRFNSFSG SIPPQILGQN LEVLFINDNG
201: FTASLPEIPG DGTTHILFLT LANNKFNGPL PRSILRSMST LTEVLFLNND FTGCIPHEIG FLTGASVIDI GGNKLTGPLP LSLMCLEKVE QLNFAGNLLF
301: GAVPEAVCML LRDNLVNLSL SDNYFTHVGP WCRGLLEKGV LDVGNNCIPF FPGQRSMQEC AEFFVKPKKY YCPHMWFHSF FSCRYSHISS SSSSAFMPMV
401: APSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)