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AT4G02730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.952
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 105879 Blast hits to 41942 proteins in 964 species: Archae - 68; Bacteria - 10657; Metazoa - 43181; Fungi - 22509; Plants - 14298; Viruses - 12; Other Eukaryotes - 15154 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP3KeggNOG:KOG0266EMBL:AC004044EMBL:AF439825
EMBL:AL161495EMBL:AY088121EMBL:AY125558EMBL:CP002687
EnsemblPlants:AT4G02730EnsemblPlants:AT4G02730.1entrez:828189Gene3D:2.130.10.10
GeneID:828189Genevisible:Q9SY00GO:GO:0080008Gramene:AT4G02730.1
hmmpanther:PTHR22847hmmpanther:PTHR22847:SF461HOGENOM:HOG000091642InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472
KEGG:ath:AT4G02730KO:K14963OMA:QKGKCIKPaxDb:Q9SY00
Pfam:PF00400Pfam:Q9SY00Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9SY00PIR:G85034PRIDE:Q9SY00PRINTS:PR00320
PRO:PR:Q9SY00PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:Q9SY00Proteomes:UP000006548RefSeq:NP_192182.1scanprosite:PS00678
SMART:SM00320SMR:Q9SY00STRING:3702.AT4G02730.1SUPFAM:SSF50978
TAIR:AT4G02730UniGene:At.26627UniProt:Q9SY00
Coordinates (TAIR10) chr4:+:1207759..1209066
Molecular Weight (calculated) 36304.80 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.20
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)