AT4G01880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.683 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : methyltransferases | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: tRNA processing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type, TRM13 (InterPro:IPR021721), Methyltransferase TRM13 (InterPro:IPR007871); Has 320 Blast hits to 305 proteins in 140 species: Archae - 2; Bacteria - 9; Metazoa - 124; Fungi - 54; Plants - 43; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:810810..812882 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51110.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAKSSNRCS FWLPKKKRSC ANTRIESSMF CGNHSQRLEG QWIPCPIDPS HSVLQENLEW HVKRCPLLKQ TVELSGQRFY QKGINAGNDE EEEKMGSCSL 101: VTSEMKRNLL YSMSVSKFHQ LIKKIEDVHG GICKDIEDSY LSPEACNIWF NKEIDRKLPF QEKHVLQQGS ILGNLEEIGV LKRCNINVEC CESDLEEKDD 201: NTAPAVVEFG AGRGYLTQML ADCYGIKKVY LVERKSYKLK ADRSLRQKES LVLERMRIDI EDLNLNAVES LHGVPYVAVG KHLCGPATDL SLRCCLSRQD 301: GESPVLRGLA IATCCHHLSQ WKSYINKEYI LSLGISKDEF HIMTSFTSWA VDDDHGSKLP GVDDIDLLDS NAKEEEEGEV RDASLISVEE VVKKMKPMER 401: AVLGFKCKQI IDAGRMKWVK KHGLNSKLVK YIPASISPEN TLLIAGKPNP SIA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)