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AT4G01850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosylmethionine synthetase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosylmethionine synthetase 2 (SAM-2); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 1 (TAIR:AT1G02500.2); Has 10906 Blast hits to 10898 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4150 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G01850-MONOMERBioCyc:ARA:GQT-2096-MONOMERBioGrid:12284EC:2.5.1.6
eggNOG:COG0192eggNOG:KOG1506EMBL:AC007138EMBL:AL161493
EMBL:AY072327EMBL:AY094454EMBL:BT000575EMBL:CP002687
EMBL:M33217EMBL:Z29136EMBL:Z33778EnsemblPlants:AT4G01850
EnsemblPlants:AT4G01850.1EnsemblPlants:AT4G01850.2entrez:826987GeneID:826987
Genevisible:P17562GO:GO:0004478GO:GO:0005507GO:GO:0005524
GO:GO:0005618GO:GO:0005730GO:GO:0005829GO:GO:0006556
GO:GO:0006730GO:GO:0009506GO:GO:0009735GO:GO:0070062
GO:GO:0071281Gramene:AT4G01850.1Gramene:AT4G01850.2gramene_pathway:2.5.1.6
gramene_pathway:ETHYL-PWYgramene_pathway:PWY-4361-ARAgramene_pathway:PWY-5041gramene_pathway:SAM-PWY
gramene_plant_reactome:1119334gramene_plant_reactome:6876869HAMAP:MF_00086hmmpanther:PTHR11964
hmmpanther:PTHR11964:SF18HOGENOM:HOG000245710InParanoid:P17562InterPro:IPR002133
InterPro:IPR022628InterPro:IPR022629InterPro:IPR022630InterPro:IPR022631
InterPro:IPR022636iPTMnet:P17562KEGG:00270+2.5.1.6KEGG:ath:AT4G01850
KO:K00789MINT:MINT-8061034OMA:NDLARRCPANTHER:PTHR11964
PaxDb:P17562Pfam:P17562Pfam:PF00438Pfam:PF02772
Pfam:PF02773PhylomeDB:P17562PIR:JQ0410PIRSF:PIRSF000497
PRIDE:P17562PRO:PR:P17562PROSITE:PS00376PROSITE:PS00377
ProteinModelPortal:P17562Proteomes:UP000006548Reactome:R-ATH-156581Reactome:R-ATH-1614635
Reactome:R-ATH-2408508RefSeq:NP_001078345.1RefSeq:NP_192094.1scanprosite:PS00376
scanprosite:PS00377SMR:P17562STRING:3702.AT4G01850.1SUPFAM:SSF55973
TAIR:AT4G01850tair10-symbols:AtSAM2tair10-symbols:MAT2tair10-symbols:SAM-2
tair10-symbols:SAM2TIGRfam:TIGR01034TIGRFAMs:TIGR01034UniGene:At.24433
UniGene:At.24731UniGene:At.71920UniPathway:UPA00315UniProt:P17562
Coordinates (TAIR10) chr4:-:796298..797479
Molecular Weight (calculated) 43257.50 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.35
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: METFLFTSES VNEGHPDKLC DQISDAVLDA CLEQDPDSKV ACETCTKTNM VMVFGEITTK ATIDYEKIVR DTCRSIGFIS DDVGLDADKC KVLVNIEQQS
101: PDIAQGVHGH FTKRPEDIGA GDQGHMFGYA TDETPELMPL SHVLATKIGA RLTEVRKNGT CRWLRPDGKT QVTVEYYNDN GAMVPVRVHT VLISTQHDET
201: VTNDEIARDL KEHVIKPIIP EKYLDDKTIF HLNPSGRFVI GGPHGDAGLT GRKIIIDTYG GWGAHGGGAF SGKDPTKVDR SGAYIVRQAA KSVVANGMAR
301: RALVQVSYAI GVPEPLSVFV DTYGTGLIPD KEILKIVKET FDFRPGMMTI NLDLKRGGNG RFQKTAAYGH FGRDDPDFTW EVVKPLKWDK PQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)