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AT4G01670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62070.1); Has 141 Blast hits to 139 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYWNeggNOG:ENOG410YQ21EMBL:AK118297EMBL:AK316747
EMBL:BT028988EMBL:CP002687EnsemblPlants:AT4G01670EnsemblPlants:AT4G01670.1
entrez:828109GeneID:828109Gramene:AT4G01670.1hmmpanther:PTHR31865
hmmpanther:PTHR31865:SF2HOGENOM:HOG000237778KEGG:ath:AT4G01670OMA:WAHAVAF
PhylomeDB:Q8GXD3Proteomes:UP000006548RefSeq:NP_192076.2TAIR:AT4G01670
UniGene:At.5374UniGene:At.68107UniGene:At.71236UniProt:Q8GXD3
Coordinates (TAIR10) chr4:-:711464..712511
Molecular Weight (calculated) 27003.10 Da
IEP (calculated) 6.26
GRAVY (calculated) -0.89
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFDEDMKMA SFLREEEEQH YSLSRLSVCS NYDGDEADGE SSASDEKRVV HGGGEKSMEE LNFSDSDKES TGCQSLPATP PRRRRRRGGG GGGYLAVSSP
101: VSGDKAYASE NEVQKTNNNQ RRRRRLKPEC PPWVDSMRRS YVGDEQSSHG GYGGGVVVVT RPIGGGRPLC MDLEEVKACK DLGFELEPGR VSYSGSTVDT
201: SSGGNSPISS NHRISSPGDD PKDVKARLKA WAQAVAFVST THHQPPNSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)