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AT1G70420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1645)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G23710.1); Has 179 Blast hits to 179 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
DNASU:843378eggNOG:ENOG410JCFIeggNOG:ENOG41114DHEMBL:AC003671
EMBL:AY045589EMBL:AY124815EMBL:CP002684EnsemblPlants:AT1G70420
EnsemblPlants:AT1G70420.1entrez:843378GeneID:843378GO:GO:0080167
Gramene:AT1G70420.1hmmpanther:PTHR33095hmmpanther:PTHR33095:SF3HOGENOM:HOG000091140
InterPro:IPR012442KEGG:ath:AT1G70420OMA:ANLVCINPfam:PF07816
PhylomeDB:O64594PIR:T01480Proteomes:UP000006548RefSeq:NP_564988.1
STRING:3702.AT1G70420.1TAIR:AT1G70420UniGene:At.10649UniProt:O64594
Coordinates (TAIR10) chr1:-:26539840..26540658
Molecular Weight (calculated) 31023.50 Da
IEP (calculated) 5.91
GRAVY (calculated) -1.08
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVISPSSPA PRFAGKERFS EVYGELNDDF GSKLKISSKE EENRDDDSWW NQNGTDKDDE GREEDFSFAS VNADNSPITA DEAFEDGQIR PVYPLFNRNI
101: FFDDPEEKTL RSPLKKLFVE STTTEEEEEE SDTVGPYCSW TNRTVEQASP ETCRKSNSTG FSKLWRFRDL VLRSNSDGKD AFVFLSNGSS STSSTSSTAA
201: RLSGVVKSSE KGKEKTKTDK KKDKMRTKSA HEKLYMRNRA MREEGKRRSY LPYKHVGFFT NVNGLTRNVH PY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)