AT3G62860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.859 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G47630.1); Has 2895 Blast hits to 2893 proteins in 1018 species: Archae - 30; Bacteria - 1827; Metazoa - 110; Fungi - 120; Plants - 454; Viruses - 49; Other Eukaryotes - 305 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23239577..23242143 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39181.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 348 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMKFKFQYEE EYIKNSRDVE LFACRWLPSS SPRALVFLCH GYGMECSSFM RECGIRLASA GYAVFGMDYE GHGRSKGARC YIKKFSNIVN DCFDYYTSIS 101: AQEEYKEKGR FLYGESMGGA VALLLHKKDP SFWNGALLVA PMCKISEKVK PHPVVINLLT RVEDIIPKWK IVPTKDVIDA AFKDPVKREE IRNNKLIYQD 201: KPRLKTALEM LRTSMDLEDT LHEITLPFFV LHGEADIVTD PEISKALFEK ASTRDKTIKL YPGMWHGLTS GEPDANVDLV FADIVNWLDA RTGDSASLTV 301: TPVHDFTSNV QKVVDGVSNG QGKSKRPQAS LLCGLNGGGR RLVHRSSM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)