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AT3G60180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: pyrimidine ribonucleotide metabolic process, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G26667.3); Has 14052 Blast hits to 13886 proteins in 4941 species: Archae - 98; Bacteria - 9111; Metazoa - 1210; Fungi - 485; Plants - 464; Viruses - 0; Other Eukaryotes - 2684 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G60180-MONOMERBioCyc:ARA:GQT-1006-MONOMEREC:2.7.4.14eggNOG:COG0563
eggNOG:KOG3079EMBL:AL138658EMBL:AY072358EMBL:AY114727
EMBL:CP002686EnsemblPlants:AT3G60180EnsemblPlants:AT3G60180.1EnsemblPlants:AT3G60180.2
entrez:825188Gene3D:3.40.50.300GeneID:825188Genevisible:Q8VY84
GO:GO:0004127GO:GO:0005524GO:GO:0005634GO:GO:0005737
GO:GO:0006207GO:GO:0006221GO:GO:0009041Gramene:AT3G60180.1
Gramene:AT3G60180.2gramene_pathway:2.7.4.14gramene_pathway:PWY-5687HAMAP:MF_00235
HAMAP:MF_03172hmmpanther:PTHR23359hmmpanther:PTHR23359:SF100HOGENOM:HOG000238771
InParanoid:Q8VY84InterPro:IPR000850InterPro:IPR006266InterPro:IPR027417
iPTMnet:Q8VY84KEGG:00230+2.7.4.3KEGG:00240+2.7.4.14KEGG:ath:AT3G60180
KO:K13800OMA:CARIVEXPANTHER:PTHR23359PaxDb:Q8VY84
Pfam:PF00406Pfam:Q8VY84PhylomeDB:Q8VY84PIR:T47842
PRIDE:Q8VY84PRINTS:PR00094PRO:PR:Q8VY84PROSITE:PS00113
ProteinModelPortal:Q8VY84Proteomes:UP000006548Reactome:R-ATH-499943RefSeq:NP_567093.1
RefSeq:NP_850726.1scanprosite:PS00113SMR:Q8VY84STRING:3702.AT3G60180.1
SUPFAM:SSF52540TAIR:AT3G60180TIGRfam:TIGR01359TIGRFAMs:TIGR01359
UniGene:At.34484unipathway:UPA00588UniProt:Q8VY84
Coordinates (TAIR10) chr3:-:22242781..22244015
Molecular Weight (calculated) 23048.50 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.41
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: METPIDAPNK DEHECPRWKK STVVFVLGGP GSGKGTQCAN VVKHFSYTHF SAGDLLRAEI KSGSEFGAMI QSMIAEGRIV PSEITVKLLC KAMEESGNDK
101: FLIDGFPRNE ENRNVFENVA RIEPAFVLFF DCPEEELERR IMSRNQGRED DNIETIKKRF KVFVESTLPI ISYYESKGKL RKINAAKSSE EVFEAVRVLF
201: ASET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)