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AT3G24730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.731
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mRNA splicing factor, thioredoxin-like U5 snRNP
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mRNA splicing factor, thioredoxin-like U5 snRNP; FUNCTIONS IN: catalytic activity; INVOLVED IN: mitosis; LOCATED IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: mRNA splicing factor, thioredoxin-like U5 snRNP (TAIR:AT5G08290.1); Has 535 Blast hits to 535 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 146; Plants - 109; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111FE6eggNOG:KOG3414EMBL:BT011726EMBL:CP002686
EnsemblPlants:AT3G24730EnsemblPlants:AT3G24730.1entrez:822071Gene3D:3.40.30.10
GeneID:822071GO:GO:0000398GO:GO:0005681Gramene:AT3G24730.1
hmmpanther:PTHR12052hmmpanther:PTHR12052:SF4HOGENOM:HOG000198385InterPro:IPR004123
InterPro:IPR012336KEGG:ath:AT3G24730OMA:MSLFLPKPANTHER:PTHR12052
Pfam:PF02966PhylomeDB:Q6NMD4PIRSF:PIRSF017199Proteomes:UP000006548
RefSeq:NP_189117.2SMART:SM01410SMR:Q6NMD4STRING:3702.AT3G24730.1
SUPFAM:SSF52833TAIR:AT3G24730UniGene:At.50225UniProt:Q6NMD4
Coordinates (TAIR10) chr3:-:9030152..9030894
Molecular Weight (calculated) 18319.10 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.06
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYNSYAEMS YLLKTLTTKE EIDRVIRDTI DEVLVLRFGR SSDAVCLQHD EILAKSVRDV SKFAKVALVD VDSEDVQVYV KYFDITLFPS TIFFFNAHHM
101: KLDSGTADHT KWVGAFHIKQ DFIDVVEAIY RGAMKGKMIV QCPIPPERIP KYQLVYKDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)