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AT3G58850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phy rapidly regulated 2
Curator
Summary (TAIR10)
Encodes PHYTOCHROME RAPIDLY REGULATED2 (PAR2), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR1 (At2g42870). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).
Computational
Description (TAIR10)
PHY RAPIDLY REGULATED 2 (PAR2); BEST Arabidopsis thaliana protein match is: phy rapidly regulated 1 (TAIR:AT2G42870.1); Has 77 Blast hits to 77 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10369eggNOG:ENOG410J3TSeggNOG:ENOG410ZFRHEMBL:AK229232
EMBL:AL353032EMBL:AM905847EMBL:BT011205EMBL:BT012139
EMBL:CP002686EnsemblPlants:AT3G58850EnsemblPlants:AT3G58850.1entrez:825054
GeneID:825054GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0007623GO:GO:0009641GO:GO:0009742GO:GO:0032502
GO:GO:0040008Gramene:AT3G58850.1hmmpanther:PTHR33124hmmpanther:PTHR33124:SF3
HOGENOM:HOG000153160InParanoid:Q9LXR7KEGG:ath:AT3G58850OMA:RGDKEDM
PaxDb:Q9LXR7Pfam:Q9LXR7PhylomeDB:Q9LXR7PIR:T49168
PRO:PR:Q9LXR7ProteinModelPortal:Q9LXR7Proteomes:UP000006548RefSeq:NP_191444.1
STRING:3702.AT3G58850.1TAIR:AT3G58850tair10-symbols:HLH2tair10-symbols:PAR2
UniProt:Q9LXR7
Coordinates (TAIR10) chr3:-:21759562..21759918
Molecular Weight (calculated) 12872.90 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.56
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKTLATSHT KRSSPPSPSS AVNTSSTGFN RRTRQRLSDA TASVSETDVE DEDEDEEGVE EKIEALQTIV PGGTELGVDA LFEETASYIL ALQCQINAIK
101: VLTTFLERCE KKDMKFGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)