AT3G55720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF620) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF620); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT5G05840.1); Has 215 Blast hits to 214 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20679893..20681338 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 48121.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.39 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||
| Length | 438 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTLCPNFDR EDGLETVLEV PMPEELFCSD NNKSGAWRSV KSSLLRSPPD NSSSLATLFG GRDSQIQMLL GIVGAPSIPL PISSDQAKID HPISNLIKNQ 101: SIESAMAKYI VKQYTAAAGG EMALDAVESM YAMGKVKMGV TEFCAAKTLN GKRKKKMVRI RNVNNNNGNG GEMGGFVLWK KGSSQWSLEL VVSGCKVSAG 201: CDGNVDWRQS PWLAHSHASN EPSGPLRRFL QGLDPKTTAN LFAGSVCVGE KAVNNEECFV LKLETQPSGL KSRSKSGMET VKHTVWGCFG QRTGLLVQLE 301: DTYLVRIKTG LEDEDMVLWE TTSETLIQDY KSIDGIQIAH RGKTRVSLLR LDESLESHSK TTMEESWEIE EVGFNVKGLS SDFFLPPGDL CIKEEEETGF 401: SFGDYTSPML LPLKVSTTSW KIKSSKVTAI EDFGEFEG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)