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AT3G55160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.552
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5543eggNOG:KOG1810EMBL:CP002686EnsemblPlants:AT3G55160
EnsemblPlants:AT3G55160.1entrez:824682GeneID:824682Gramene:AT3G55160.1
hmmpanther:PTHR14387hmmpanther:PTHR14387:SF0InParanoid:F4JFA0InterPro:IPR016024
InterPro:IPR019442iPTMnet:F4JFA0KEGG:ath:AT3G55160OMA:QVFMSTE
PaxDb:F4JFA0Pfam:PF10350PRIDE:F4JFA0ProteinModelPortal:F4JFA0
Proteomes:UP000006548RefSeq:NP_191076.2STRING:3702.AT3G55160.1SUPFAM:SSF48371
TAIR:AT3G55160UniGene:At.35047UniProt:F4JFA0
Coordinates (TAIR10) chr3:-:20445629..20452400
Molecular Weight (calculated) 240624.00 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.02
Length 2130 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSAKWRALQH RHRYTYSAVL FPSSFTASLS QSSLSQSCPK FYSNIEELVS LNSIYAQVNH AKKVVASFGE FLAKANENEG GERETVSVRE AIRFYLEILF
0101: MENSLPLHKT LVSALAKTTK FHSVISSCFK ELCDEYGGFE DGGNRFCVSR VALSVMGMPK LGYLVDIIED CALLVGYDIV SGLNGIVLDT EACDRPPPTV
0201: MEQCQEALSC SYYLFQRFPL KFKGLVGEDA SFMESVLAVQ VSILKSLAFS RDCYVAAGVS FCAALQVCLK DEELGLFIAQ CIFCWSSVVR LADIVSKIPF
0301: AGDICSEICS FSSLSRLCLI RGILTTVSRG ILVSSFARLS NSDCDHKTIL YDGILLELCD LCENPIDSHL NFHVLTVMQI CMQQIKTSML TDLSEGYDPM
0401: PDSMAARVLR IIWNNLEDPL SQTVKQVHLM FDLLLDIQTT VHQTDDKVGM RESLLKIVNY LLRLGSRCKG RYVPLASLTR RLGAKTLMDM SPNLLFEMAN
0501: AYIDDDVCYA VTSFIKCFLE LLRDESWGSE GVDQGYARYR EHCLPPFLYG LASGKSKLRS NLNTYAVQVL LELDVDSIFL LLAYISIGPS EEETKLNYTE
0601: LSNMSMELTV EQKVVVLVSL LKVCRTLAFL EGDIEQKRST DAFAVVQIKG IELKIPIEWL KMALTHVDES VRVDAAETLF LNPKTSSLPS PLELYLMKEA
0701: VPLNMRSSST GFQMKWTSLF RKFFLRVRTS LEKQYKLGSL QPLKSDKNAV LRAESLFKFM RWLSSFLYLS CYPSAPYRRK IMATELIQIM IEVWPVVASK
0801: DPTSHQGHLY PYCDIVTSHD STLLLVGSIV DSWDRLRENS FRILLHFPTP FTGISSEDMV QIIIPWAKQL VCSPRVRESD AGALTLRLIF RKYVLDLGWI
0901: VKVSTTVFCC ERECENIDCR NQNSKPKYPV VEYIKSLIQW LDASVTEGER DLSEACKNSF VHGVLLALRY TFEELDWNSN AVLSISEMRK ELEKLLKLVT
1001: RITTLALWVV SADALCLPED MDDIIDDDSF FSNVQDDSAA VLSEEHTSTY PKHVHETVQS EQVVMVGCWL AMKEVSLLLG TIIRKIPLPT SSLRPLENGD
1101: TASSVPNDLV IGNSESLLDL KQLEKIGDHF LEVLLKMKHN GAIDKTRAGF TALCHRLLCS NDPRLCKLTE SWMEQLMERT VAKGQTVDDV LRRSAGIPAA
1201: FIALFLSEPE GSPKKLLPRA LRWLIGLAEK PLMEPLEQKG SKHMVEEINS SDMHSNEKLS KVRDEGVVPT VHAFNVLKAT FNDTNLSTDT SGFSAEAMIV
1301: SIRSFSSPYW EVRNSATLAY TALVRRMIGF LNVQKRGSTR RALTGLEFFH RYPLLHPFIY SELKAATDLL DTSGSSDSNL ANLVHPSLWP ILILLSRLKP
1401: SPIASESGDD LDPFVFMPFI MKCSTQSNLR VRVLASRALV GLVSNEKLQS VLLRIASTLP SNGAQGGSFN YLHGILLQLG NLLDTNCRDL ADNSKKDQII
1501: GKLINVLANC SWLASPLTCP CPILCTSFLR VLDHMRVIEW TCSESKNLRD IYKLHLDLST NCLDADASYG FSYYDPSIAE LREQAAVSYF GCVFQPSDEA
1601: AEVFQITQRP NLQSQKVPEA LDFPHLNERL LRCISDQSYE VRLATLKWFL RFLKSEDSSF SESSSIWNWA KNGLQVILLE LLDKEKNHKC ENYILRILFQ
1701: WNLLMFKKSC NKESVEGIYV GSLNYDSVFH LWGRLTSLYE STRRAKTRGT LMCCLAICVK HLTGLFIHKN ESEKEEEPRW SCITDCVSYF VNLIKQKSLP
1801: SEQVNVRHAS AEAIIASGIL EQAKLIGPLV SNHQISSETT PSKFQKACDV YAYQILEMWF TCIKLLEDED DVIRSKLATD VQKCFFTAVE VPTQVDKVLE
1901: LSFNHLSSIL GHWNEYSQYL SRWVFNTADY TSPPKGGSDL VRRVFDKEID NHHEEKLLIL QFCCYHLQKL PNRDFSLAQL LDWRSKFHNQ LLAFAKDHVS
2001: KQRESWVGGV GNHKDVFLPL YGNLLGLYVF SDCIFRFSTD SNDKKTLFSD IIELGEALKP FLRNPLVSNM FRVVVRLHEK LLNDSLMDLS TVLSGEIWEG
2101: FDPYFLLTEG EIKVRSFYSD ESGACSPPLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)