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AT3G54830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G39130.1); Has 4642 Blast hits to 4638 proteins in 371 species: Archae - 12; Bacteria - 272; Metazoa - 1629; Fungi - 958; Plants - 1130; Viruses - 3; Other Eukaryotes - 638 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1303EMBL:CP002686EnsemblPlants:AT3G54830
EnsemblPlants:AT3G54830.1entrez:824648GeneID:824648GO:GO:0016021
Gramene:AT3G54830.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF240InParanoid:F4JE35
InterPro:IPR013057KEGG:ath:AT3G54830OMA:KSSHYLPPaxDb:F4JE35
Pfam:PF01490PRIDE:F4JE35ProteinModelPortal:F4JE35Proteomes:UP000006548
Reactome:R-ATH-425393Reactome:R-ATH-888590RefSeq:NP_191043.2STRING:3702.AT3G54830.1
TAIR:AT3G54830TMHMM:TMhelixUniGene:At.35076UniProt:F4JE35
Coordinates (TAIR10) chr3:-:20311901..20315030
Molecular Weight (calculated) 59739.60 Da
IEP (calculated) 5.48
GRAVY (calculated) 0.20
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MNHSTSDQSL YIESDDGDDE RKHLSDDEDD DGTLSDTSDA YNQNQHHLSK ASPYSTAWPK SYRQSIDMFG SVPSPNLGFL ANSSMSRRGS SFMSSTLTRR
101: HTPESLPCVT KPLLEDEEAP KHKLSTHSLL PSKPSSSMVV SHDMGISNDS SFGQAVLNGV NVLCGVGILS TPYAVKEGGW LGLIILFAFG ILCFYTGLLL
201: RYCLDSHPDV QTYPDIGHAA FGSTGRILVS VILYMELYAM SVEYIILEGD NLSSMFPNAS LSIGGFHLDA PRLFALLTTL AVLPTVWLRD LSVLSYISAG
301: GVIASVLVVL CLFWVGLVDD VGIHSKGTPL NLATLPVSVG LYGYCYSGHG VFPNIYTSMA KPSQFSAVLL ASFGICTLMY AGVAVMGYSM FGESTESQFT
401: LNLPQDLVAS KIALWTTVVN PFTKYPLSRN IQRLFIYLFA MSLEELIPSN YGKSRFYAIA IRSALAISTL LVGLAIPFFG LVMSLIGSFL TMLIFLDTDA
501: DTTASLFLEH LKEKSNPYSG DNLYLNYDSR SSMFSHWHIF SPCKDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)