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AT3G51400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis protein of unknown function (DUF241)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis protein of unknown function (DUF241); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35720.1); Has 444 Blast hits to 436 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX4YeggNOG:ENOG41104AMEMBL:AL133452EMBL:BT025720
EMBL:CP002686EnsemblPlants:AT3G51400EnsemblPlants:AT3G51400.1entrez:824303
GeneID:824303Gramene:AT3G51400.1hmmpanther:PTHR33070hmmpanther:PTHR33070:SF18
InterPro:IPR004320KEGG:ath:AT3G51400ncoils:CoilOMA:DITCRIK
Pfam:PF03087PhylomeDB:Q9SD09PIR:T45771Proteomes:UP000006548
RefSeq:NP_190708.1TAIR:AT3G51400UniGene:At.35395UniGene:At.75576
UniProt:Q9SD09
Coordinates (TAIR10) chr3:-:19078086..19078919
Molecular Weight (calculated) 31662.60 Da
IEP (calculated) 10.53
GRAVY (calculated) -0.23
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASYHVRSS SLPARLHPHG LNQIQQLLNK LRADDNNSLS LLSNLYDSVS HLFNDSPSSL LVPHHSFFTH LLDLSLLHLD LCSKLRDITC RIKDCLRDLR
101: SAFRRRRHSG DSTIRCHVKA FIRSRKAVHK DIAKLLLLLK QTGLSSSESS HPLITLLQQV CSQTCQTFRT VLLSLSTAVP KPRPSKWALV TKLVIKNVTS
201: TSGQVRTGHR NEFQMMDEEL RRFSMAEEIK KDRIKSMITN LDKVDVAVED LEESLERLYR RMIQARVSLL NILSLHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)