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AT3G50810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G37235.1); Has 207 Blast hits to 207 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXAGeggNOG:ENOG410YMN0EMBL:AL049862EMBL:CP002686
EnsemblPlants:AT3G50810EnsemblPlants:AT3G50810.1entrez:824245GeneID:824245
Genevisible:P0CB17GO:GO:0005886GO:GO:0016021Gramene:AT3G50810.1
hmmpanther:PTHR32021hmmpanther:PTHR32021:SF2HOGENOM:HOG000243377InParanoid:P0CB17
InterPro:IPR006702KEGG:ath:AT3G50810OMA:MAFLTWIPaxDb:P0CB17
Pfam:P0CB17Pfam:PF04535PhylomeDB:P0CB17PIR:T08402
PRO:PR:P0CB17Proteomes:UP000006548RefSeq:NP_190650.4TAIR:AT3G50810
TMHMM:TMhelixUniGene:At.35451UniProt:P0CB17
Coordinates (TAIR10) chr3:-:18889002..18889868
Molecular Weight (calculated) 16824.60 Da
IEP (calculated) 4.01
GRAVY (calculated) 1.05
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHVPGSFGT SASFALRFGQ TIFSAASLIF MCFDFDFYDF TTFCYLAMVM AIVTPWSILL ALTDTYSVLV KLLPQELRVL SIVFAGDFVL SFLSLGGACA
101: VASATELLAS ADGKICDGSL CIQYQVSAAL AFLCWFLLLA SALFNFWSLP SLYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)