AT3G49410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor IIIC, subunit 5 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription factor IIIC, subunit 5; CONTAINS InterPro DOMAIN/s: Transcription factor IIIC, subunit 5 (InterPro:IPR019136); BEST Arabidopsis thaliana protein match is: Transcription factor IIIC, subunit 5 (TAIR:AT5G24450.1); Has 2810 Blast hits to 2245 proteins in 293 species: Archae - 21; Bacteria - 231; Metazoa - 753; Fungi - 513; Plants - 191; Viruses - 81; Other Eukaryotes - 1020 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18325015..18328858 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65654.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.30 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||
| Length | 574 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIIEEGTIS GTLPSKEAFV VHFPGYPSSI SRAIETLGGI QGITQARESI SNKLELRFRP EDPYAHPALG EQRPCSGFLL RISKQDIKKP ESQSVLDTSR 101: DVCLEEASPV LCADIVARLS ESFHFDGMAD YQHVIPIHAD IAQQKKRKWM DVDPLTGKSD LMGLADEDVM MLLPQFFAPK DIPDNVALKP PATSGPKKKD 201: DAATQNFYEI DVGPVFAIDF SVKEIPKKLK WEDFVSRSSN HWQWQVAVSA LFEERPIWTR DSVVQRLLDK GLKCTHHMLN RFLLRAAYYF SSGPFLRFWI 301: KRGYDPRNDP ESRVYQRMEF RVPPELRGYC DANATNNSKP SWNDICAFKL FPFKCQTFLQ LFELDDEYIQ REIRKPPKQT TCSHKSGWFS EAMLDTLRLR 401: VAVRFVSVFP ETGFEDVFKS IQEEFERSEK VQIQKETLKP SLVKHREATK GSEDMETFKS VNENVDANVN EDGEDENLDD EDEDEEEEEE LDMAAGDNEI 501: SLDSHGYLDT ENSSRTYLQG LFDSFPSSEP NLYGDFAVDD GSDGEFQIYE EESEGLYSID DDHNDDDEEE DDDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)