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AT3G23370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYESeggNOG:ENOG410YIPREMBL:AB015474EMBL:CP002686
EnsemblPlants:AT3G23370EnsemblPlants:AT3G23370.1entrez:821918ExpressionAtlas:Q9LW59
Gene3D:3.30.70.330GeneID:821918GO:GO:0000166GO:GO:0003676
Gramene:AT3G23370.1HOGENOM:HOG000064630InterPro:IPR000504InterPro:IPR012677
OMA:RIDIPRTPfam:PF14259Pfscan:PS50102PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_188979.2STRING:3702.AT3G23370.1SUPFAM:SSF54928
TAIR:AT3G23370UniGene:At.53457UniProt:Q9LW59
Coordinates (TAIR10) chr3:+:8357613..8360792
Molecular Weight (calculated) 89453.10 Da
IEP (calculated) 5.55
GRAVY (calculated) -0.39
Length 811 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIARLLSPK STPQFNNRGF VILTRRWLSS SLEDGRKCER LSDSEASTNK DIGQKVVHWY SLGGLISNLK QKIMGNVILM DKSSGEDSVL PKSPMVSSSD
101: VAVTKVVTLK NVAESENCIH SSVKEEIGSE DASQSVAADN KICITSSIKE ESFVSEMGSQ DASQSVAVEN KNCISSSIKE ESSVSEMGSQ DASQSVAGIE
201: ACGKRESITV SNDRLGNINR LDGLESGQGK VLRSIRTERV DPSEEQSSKD VTLGFLTEEV SESQTSSRKN MGKLQPAKGL FDKVKPPQNS LSKLFVNSDP
301: YKEVKHPLRF ETLSNSNSSM STGESCSDAG DQHSLFGKML SDPVQEIKSI PNENDEHRLS DAPQNLSSLT SVLLRDWIDE QRSEDLAAIR ERKSIFSLES
401: SRNTVAPMAV GTMKKLMDSL NFPTDNGTDA EANSLNSNSR EEKWISEGNS AMQNSDRFCA IEEEEPQGET FVMETQSLCS QDTLDATTVN PKVTKKSFLA
501: LSAGEHSPNK VLLRFLPESS MKKHIVKAFS SQFGAVLHVQ EIPSIEGCIY KDALLTFETN TAVKKALKKG HVTVMNYNTV VEATSQEDMV ERICIPDLIG
601: DPDVPVALVK EPARTVKIHP LTHDFSSNQI KEALKFCRSN ISKFTLGSSR TDAFVEFETE DGKERALAEH SISICNTQLF ISRIDIPRTI VARISNLSKS
701: AMRDVRALCV PYGQIRGVYI RGTGVADVFF DISEWPNMLA ILNSMNGMEI DGKKLVVRPA TTVIPPEILR VLWKDPREKR YVKSVIQNLV REIEQPLDAT
801: RCHTLITELL L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)