AT3G48830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.565 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Poly A polymerase, head domain (InterPro:IPR002646), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 11594 Blast hits to 10901 proteins in 2648 species: Archae - 2; Bacteria - 6462; Metazoa - 1299; Fungi - 748; Plants - 674; Viruses - 8; Other Eukaryotes - 2401 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18103272..18110216 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99382.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.67 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 881 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVLSVGFFA CRSHFPVLPL FYCFSKVQLN TVAAAMETVD DKDSDHHHDK GSNKTSKAPE WKKLNSKDLG ITTSMISKPT RIVLNGLKSK GYDVYLVGGC 101: VRDLILKRTP KDFDILTSAE LREVVRSFSR CEIIGKKFPI CHVHIGNDMI EVSSFSTSAQ NSLRNTRTGS GKSNGSYDED SIRFNNCLQR DFTINGLMFD 201: PYAKVIYDYL GGIEDIKKAK VRTVFHAGTS FQEDSARILR GTRIAARLGF TISKETAHFL KNLSFLVQRL HRGRILLEMN YMLAYGSAEA SLRLLWKFGI 301: LEILLPIQAA YLVRTGFKRR DKRSNLLLSL FGNLDKLLAP DKPCHSSLWL TILALHKALA DQPRYPSVVA AFSLAVHNGG DVLEAVKNTR KVTKPHNRSF 401: FELLEPEEMD SQTLLDEVMD FDSSIKEALG QMTDGRFISK AMAAYPQAPY SDMVFIPLQL YLDARRIFEC VKENGQKGFV PKQDSKREPE DDLETKPILK 501: KHKENSEEEN KEQIKGTVEL LETKSDQAPV KETVEGLDET PDSVEVPKKY MSGLLIRCFP SRKKTLYVCC LPRDTKMPDI IDFFKDVGQV VSVQLTTKRN 601: GLRLSTGFVE FASANEAKKA LDMKNGEYLC GNKLILGMAS CENIAQPKYE DYIQQESLPI EEEETPPKIV QSGANTLGCS IQAAAFSMTD ILSFHFYRLD 701: FFNDVGEVVS VRLIVSPESK HVGYGFVEFA SPCLANMALE KKNGEYLHDH KIFLGVAKTA PYPPRIKYNL AEKLWYEDYL LRDSLLIEED ETVEGLDETP 801: SCVEAVALRE KVLIIAHVPR RTKISHIIDF FKDAGQVVNV RLIVDQKGKP FGRGFVEFTS ADEAKKVRLV YSNDEKYFTS H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)