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AT3G47800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose mutarotase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: aldose 1-epimerase activity; INVOLVED IN: galactose metabolic process, hexose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Aldose 1-epimerase, subgroup (InterPro:IPR015443), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G15140.1); Has 4663 Blast hits to 4656 proteins in 1452 species: Archae - 5; Bacteria - 3197; Metazoa - 273; Fungi - 257; Plants - 219; Viruses - 0; Other Eukaryotes - 712 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47800-MONOMEREC:5.1.3.3eggNOG:COG2017eggNOG:KOG1604
EMBL:AK227019EMBL:AL049746EMBL:AY064132EMBL:BT004511
EMBL:CP002686EnsemblPlants:AT3G47800EnsemblPlants:AT3G47800.1entrez:823934
Gene3D:2.70.98.10GeneID:823934GO:GO:0004034GO:GO:0019318
GO:GO:0030246Gramene:AT3G47800.1gramene_pathway:5.1.3.3gramene_pathway:PWY-6317
hmmpanther:PTHR10091hmmpanther:PTHR10091:SF3InterPro:IPR008183InterPro:IPR011013
InterPro:IPR014718InterPro:IPR015443KEGG:00010+5.1.3.3KEGG:00052+5.1.3.3
KEGG:ath:AT3G47800KO:K01785OMA:YQVYEANPfam:PF01263
PhylomeDB:Q9STT3PIR:T07719PIRSF:PIRSF005096Proteomes:UP000006548
RefSeq:NP_190364.1SMR:Q9STT3STRING:3702.AT3G47800.1SUPFAM:SSF74650
TAIR:AT3G47800TMHMM:TMhelixUniGene:At.3249UniGene:At.48748
UniPathway:UPA00242UniProt:Q9STT3
Coordinates (TAIR10) chr3:+:17634971..17636998
Molecular Weight (calculated) 39716.90 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.26
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKKQSPLHV VGVSVLMVLL CSVNYSLCEK IKTYKLTRGS LSVTFTNYGA VMTSLLLPDR HGKQDDVVLG FDTVDGYKND TTYFGAIVGR VANRIGGAKF
101: KLNGHLYKTD PNEGRNTLHG GSKGFSDVIW SVQKYVPTSH ITFTYDSFDG EEGFPGNVTV KVTYMLIGEN KLGVKMEAKP LNKPTPINLA LHTYWNLHSH
201: NSGNILSHKI QLLAGKITPV DDKLIPTGEI TSITGTPYDF LEPREIGSRI HELPGGYDIN YVIDGPIGKH LRKTAVVTEQ VTGRKMELWT NQPGVQFYTS
301: NMMKRVVGKG KAVYEKYGGL CLETQGFPDS VNHKNFPSQI VNPGESYLHV MLFRFTAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)