suba logo
AT3G47560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BAAT/Acyl-CoA thioester hydrolase C-terminal (InterPro:IPR014940); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G29840.1); Has 2811 Blast hits to 2808 proteins in 713 species: Archae - 69; Bacteria - 1437; Metazoa - 10; Fungi - 72; Plants - 197; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).
Protein Annotations
EMBL:AL132955EMBL:BT020323EMBL:BT020400EMBL:CP002686
EnsemblPlants:AT3G47560EnsemblPlants:AT3G47560.1entrez:823910ESTHER:arath-F1P2.110
ExpressionAtlas:Q9SN82Gene3D:3.40.50.1820GeneID:823910GO:GO:0016787
Gramene:AT3G47560.1hmmpanther:PTHR10992hmmpanther:PTHR10992:SF808InterPro:IPR022742
InterPro:IPR029058KEGG:ath:AT3G47560MEROPS:S09.A31Pfam:PF12146
Pfam:PF12695PhylomeDB:Q9SN82PIR:T45716Proteomes:UP000006548
RefSeq:NP_190340.1SMR:Q9SN82SUPFAM:SSF53474TAIR:AT3G47560
UniGene:At.48746UniGene:At.71217UniProt:Q9SN82
Coordinates (TAIR10) chr3:-:17525575..17526977
Molecular Weight (calculated) 29871.10 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.43
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSQGSTQQ KIVILNSHNE NLVGLLHETG STEIVVLCHG FRSNKNFEIM KNVAVAIERE GISAFRFDFS GNGESEGSFY YGNYNYEADD LHSVIQYFSN
101: LNRVVTIILG HSKGGDVVLL YASKYHDIPN VINLSGRYDL KKGIGERLGE DFLERIKQQG YIDVKDGDSG YRVTEESLMD RLNTDMHEAC LKIDKECRVL
201: TVHGSGDETV PVEDAKEFAK IIPNHELQIV EGADHCYTNY QSQLVLTVME FIKSHCEEKN DKTCN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)