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AT5G04490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vitamin E pathway gene 5
Curator
Summary (TAIR10)
Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.
Computational
Description (TAIR10)
vitamin E pathway gene 5 (VTE5); FUNCTIONS IN: phytol kinase activity, phosphatidate cytidylyltransferase activity; INVOLVED IN: vitamin E biosynthetic process, phospholipid biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: Phosphatidate cytidylyltransferase family protein (TAIR:AT5G58560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04490-MONOMERBioCyc:MetaCyc:AT5G04490-MONOMERBRENDA:2.7.1.182EC:2.7.1.182
eggNOG:COG0170eggNOG:KOG4453EMBL:AL162875EMBL:AY085036
EMBL:BT004006EMBL:BT021123EMBL:CP002688EnsemblPlants:AT5G04490
EnsemblPlants:AT5G04490.1entrez:830328GeneID:830328Genevisible:Q9LZ76
GO:GO:0009507GO:GO:0010189GO:GO:0010276GO:GO:0016021
GO:GO:0031969Gramene:AT5G04490.1gramene_pathway:2.7.1.-gramene_pathway:PWY-5107
hmmpanther:PTHR32523HOGENOM:HOG000265019InParanoid:Q9LZ76KEGG:ath:AT5G04490
KO:K18678OMA:GYFQLDWPaxDb:Q9LZ76Pfam:Q9LZ76
PhylomeDB:Q9LZ76PIR:T48445PRIDE:Q9LZ76PRO:PR:Q9LZ76
ProteinModelPortal:Q9LZ76Proteomes:UP000006548RefSeq:NP_196069.1SMR:Q9LZ76
STRING:3702.AT5G04490.1TAIR:AT5G04490tair10-symbols:VTE5TMHMM:TMhelix
UniGene:At.33117UniPathway:UPA00160UniProt:Q9LZ76
Coordinates (TAIR10) chr5:+:1279867..1281587
Molecular Weight (calculated) 33091.80 Da
IEP (calculated) 9.69
GRAVY (calculated) 0.55
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATLPLSPI NHQLCRFGNN SLTTHRFCSP GFLISSPCFI GLTGMGSATQ LRARRSLISS AVATNSLLHD VGATVAVLGG AYALVLSFES LTKRNVIQQS
101: LSRKLVHILS GLLFVLAWPI FSGSTEARYF AAFVPLVNGL RLVINGLSIS PNSMLIKSVT REGRAEELLK GPLFYVLALL FSAVFFWRES PIGMISLAMM
201: CGGDGIADIM GRKFGSTKIP YNPRKSWAGS ISMFIFGFFI SIALLYYYSS LGYLHMNWET TLQRVAMVSM VATVVESLPI TDQLDDNISV PLATILAAYL
301: SFGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)