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AT3G47210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF247)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, petal, hypocotyl, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G47250.3); Has 1302 Blast hits to 1037 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL133292EMBL:AY069874EMBL:AY142016EMBL:CP002686
EnsemblPlants:AT3G47210EnsemblPlants:AT3G47210.1entrez:823874GeneID:823874
GO:GO:0005886Gramene:AT3G47210.1hmmpanther:PTHR31549hmmpanther:PTHR31549:SF3
HOGENOM:HOG000237813InterPro:IPR004158KEGG:ath:AT3G47210OMA:IELYESE
Pfam:PF03140PhylomeDB:Q9SD52PIR:T45657Proteomes:UP000006548
RefSeq:NP_190305.1TAIR:AT3G47210UniGene:At.28442UniProt:Q9SD52
Coordinates (TAIR10) chr3:+:17385545..17386969
Molecular Weight (calculated) 54812.60 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.16
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKTEIFSS PSSPPPSFYM VDKTGKLSSP SLPSSPPPSY YMGEKTEKYS SPSSPPPSFY RKYIISYINE QVELDSRSEK RVLLLESAGK ESCCIFRVPK
101: SFAEMNPEAY KPKVVSIGPY HHGRKHLEMI QQHKLRFLHL FLRTASVDRD VLFNAVVDWE DEIRKSYSEG LEGSPHELVY MMILDGCFIL MLLLIVSRKI
201: ELYESEDPIL TIPWILPSIQ SDLLLLENQV PFFVLQTLFD KSEIGVPGDL NRMAFSFFNL SMDKPERYWV KHRNFNAKHL LDLIRMSFLP MDGYEDFQLT
301: KGKSRKKSSS GLTLLLSATR LSLQGIDFSL RSGADSMLDI RLKKNRLQIP VLRLDGFIIS ILLNCVAFEQ FYAKSTNHIT SYVVFMGCLL NGKEDATFLS
401: RRRIIENYFG SEKEVSKFFK TICKDVVFDI HASYLRNVFV EINENTSKWY SICRSFLLSP RNFVALRFRP IYRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)