suba logo
AT3G46630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 0.894
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3223)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3223); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3223) (TAIR:AT1G45230.1); Has 180 Blast hits to 180 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX3VeggNOG:ENOG411274CEMBL:AK118966EMBL:AL133314
EMBL:AY086108EMBL:BT005493EMBL:CP002686EnsemblPlants:AT3G46630
EnsemblPlants:AT3G46630.1entrez:823816GeneID:823816GO:GO:0009507
Gramene:AT3G46630.1hmmpanther:PTHR33415hmmpanther:PTHR33415:SF4HOGENOM:HOG000005673
InterPro:IPR021602KEGG:ath:AT3G46630Pfam:PF11523PhylomeDB:Q9SNB5
PIR:T45600Proteomes:UP000006548RefSeq:NP_190247.1SMR:Q9SNB5
STRING:3702.AT3G46630.1TAIR:AT3G46630UniGene:At.35903UniProt:Q9SNB5
Coordinates (TAIR10) chr3:-:17181138..17182346
Molecular Weight (calculated) 24193.00 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.49
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSLLLLRTL PLLRNGFLNH RHQVGIVAGG ILSHRRRLLC SLADRPQFYE NNDSVSPVEG SGAAAMNVTS PVVDNSWRYE DPDYRKWKNL EAEILRDIEP
101: ISLLAKEILH SDRYLDGERL DFEDEKIVME KLLPYHPYSK DKIGCGLDFI MVDRHPQFRH SRCLFVVRTD GGWIDFSYQK CLRAYVRDKY PSHAERFIRE
201: HFKRASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)