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AT3G45600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21533090 (2011): plasma membrane
  • PMID:31541795 (2020): plasma membrane
  • PMID:30875866 (2019): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23990937 (2013): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraspanin3
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin3 (TET3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin4 (TAIR:AT5G60220.1); Has 665 Blast hits to 663 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKYWeggNOG:ENOG410YB0XEMBL:AF386960EMBL:AL138657
EMBL:BT006312EMBL:CP002686EnsemblPlants:AT3G45600EnsemblPlants:AT3G45600.1
entrez:823702GeneID:823702Genevisible:Q9M1E7GO:GO:0005886
GO:GO:0009506GO:GO:0016021Gramene:AT3G45600.1hmmpanther:PTHR32191
hmmpanther:PTHR32191:SF7HOGENOM:HOG000238911InParanoid:Q9M1E7InterPro:IPR000301
InterPro:IPR018499KEGG:ath:AT3G45600OMA:NRGYLDYPaxDb:Q9M1E7
Pfam:PF00335Pfam:Q9M1E7PhylomeDB:Q9M1E7PIR:T47500
PRIDE:Q9M1E7PRINTS:PR00259PRO:PR:Q9M1E7Proteomes:UP000006548
RefSeq:NP_190146.1STRING:3702.AT3G45600.1TAIR:AT3G45600tair10-symbols:TET3
TMHMM:TMhelixUniGene:At.22349UniGene:At.70243UniProt:Q9M1E7
Coordinates (TAIR10) chr3:-:16733973..16735854
Molecular Weight (calculated) 31890.00 Da
IEP (calculated) 8.72
GRAVY (calculated) 0.25
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTSNHLIGL VNFLTFLLSI PILGGGIWLS SRANSTDCLR FLQWPLIVIG ISIMVVSLAG FAGACYRNKF LMWLYLVVML LIIAALIGFI IFAYAVTDKG
101: SGRTVLNRGY LDYYLEDYSG WLKDRVSDDS YWGKISSCLR DSGACRKIGR NFNGVPETAD MFFLRRLSPV ESGCCKPPTD CGFSYVNETG WDTRGGMIGP
201: NQDCMVWSND QSMLCYQCSS CKAGVLGSLK KSWRKVSVIN IVVLIILVIF YVIAYAAYRN VKRIDNDEPA GEARMTKSHP SHFHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)