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AT3G25030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G13100.1); Has 841 Blast hits to 830 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 404; Fungi - 82; Plants - 212; Viruses - 11; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0YXeggNOG:ENOG410YQF9EMBL:AP000412EMBL:BT014945
EMBL:BT015397EMBL:CP002686EnsemblPlants:AT3G25030EnsemblPlants:AT3G25030.1
EnsemblPlants:AT3G25030.2entrez:822094Gene3D:3.30.40.10GeneID:822094
GO:GO:0008270Gramene:AT3G25030.1Gramene:AT3G25030.2hmmpanther:PTHR12183
HOGENOM:HOG000015147InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G25030
OMA:AAEISCCPfam:PF13920Pfscan:PS50089PhylomeDB:Q9LJR9
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_001030762.1RefSeq:NP_189139.1
SMART:SM00184SMR:Q9LJR9SUPFAM:SSF57850TAIR:AT3G25030
UniGene:At.49651UniGene:At.69421UniProt:Q9LJR9
Coordinates (TAIR10) chr3:+:9122650..9123402
Molecular Weight (calculated) 27834.30 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.33
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)