AT3G23530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.974 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cyclopropane-fatty-acyl-phospholipid synthase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cyclopropane-fatty-acyl-phospholipid synthase; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: Cyclopropane-fatty-acyl-phospholipid synthase (TAIR:AT3G23510.1); Has 14893 Blast hits to 14869 proteins in 1968 species: Archae - 117; Bacteria - 7289; Metazoa - 156; Fungi - 477; Plants - 317; Viruses - 0; Other Eukaryotes - 6537 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8437472..8442597 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98067.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 867 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKVAVIGSGI SGLGSAYVLA NQGVKEVVLY EKEESLGGHA KTVRFDGVDL DLGFMVFNRV TYPNMMEFFE NLGVEMEVSD MSFAVSLDNG KGCEWGSRNG 101: VSGLFAQKKN VLNPYFWQMI REIVRFKEDV LKYIEELEGN PDIDRKETLG EFLNSRGYSE LFQQAYLVPI CGSIWSCPSD GVLSFSAYSV LSFCCNHHLL 201: QIFGRPQWLT VAGRSQTYVA KVRTELERLG CRIRTSCDVK SVSTSENGCV TVTSGDGSKE VFDRCILAMH APDALRLLGE EVTFDESRVL GAFQYVYSDI 301: YLHHDIDLMP RNQAAWSAWN FLGSTEKKVC VTYWLNILQN LGENSEPFFV TLNPDETPKK TLLKWTTGHP VPSVAAWTAS QELHKIQGKR NIWFCGAYQG 401: YGFHEDGLKA GMAAARGLLG KETALLNNPR HMVPSLTETG ARLFVTRFLG QFISTGSVTI LEEGGTMFTF GGKDSTCPLK SILKIHSPQF YWKVMTQADL 501: GLADAYINGD FSFVDKESGL LNLIMILIAN RDTKSNLSKK RGWWTPMFLT AGLASAKYFL KHVSRQNTLT QARRNISRHY DLSNELFGFF LDDTMTYSSA 601: VFKSDDEDLR TAQMRKISLL IDKARIEKDH EVLEIGCGWG TLAIEVVRRT GCKYTGITLS IEQLKYAEEK VKEAGLQDWI TFELRDYRQL SDAQKYDRII 701: SCEMLEAVGH EFMEMFFSRC EAALAENGLI VLQFISIPEE RYNEYRLSSD FIKEYIFPGG CLPSLARVTT AMSSSSRLCI EHVENIGIHY YQTLRLWRKN 801: FLARQKQIMA LGFDDKFVRT WEYYFDYCAA GFKTLTLGNY QLVFSRPGNV AAFADSYRGF PSAYCVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)