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AT3G23160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF668)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1); Has 431 Blast hits to 290 proteins in 19 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 424; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IECHeggNOG:ENOG410ZS09EMBL:AB025608EMBL:CP002686
EnsemblPlants:AT3G23160EnsemblPlants:AT3G23160.1entrez:821892GeneID:821892
Gramene:AT3G23160.1hmmpanther:PTHR31371hmmpanther:PTHR31371:SF2InterPro:IPR007700
InterPro:IPR021864KEGG:ath:AT3G23160ncoils:CoilOMA:EPLVHKV
Pfam:PF05003Pfam:PF11961PhylomeDB:Q9LTD4Proteomes:UP000006548
RefSeq:NP_188957.2TAIR:AT3G23160UniGene:At.64131UniProt:Q9LTD4
Coordinates (TAIR10) chr3:-:8260059..8261654
Molecular Weight (calculated) 60380.30 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.39
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSEAWIVKM RNQVSSNLKH ALLLESSSTK KTPKPVSLPK QTIGILSFEV ANVMSKTIHL HRSLSDTEIS KLKAEVFHSE GVRKLVSSDE NHLLDLSVSE
101: KLDDLSRVAS VVSRLGKKCN EPALQGFEHV YEDIVNGAID FRKLGFLVKD MESMVKKMER FVNATCSLYC EMEVMNELEQ AIVKLQRSQQ HQESVKAFEQ
201: KLMWQRQDVK SLRDGSLWNQ TYDKVVEMLA RTVCTIYGRI ETVFGGLGLR GKKDVTLKRD RSKNEASKAV NSRSVAGFKD SRRSEADEFT RAGDFNFPCG
301: TNPGRMFMEC LAMNRTIGDD DDDDDEDGGR ITFPLSTARM IRSNKFGFKS RLTQHASAST IGGSALSLHY ANVVIVVEKL LKYPHLIGEE ARDDLYQMLP
401: TSLKTTLKAS LRSYLKNISI YDAPLAHDWK ETIDGILSWL APLAHNMIRW QSERNFEQQN QIVKRTNVLL LQTLYFADRE KTEAAICKLL VGLNYICHYE
501: QQQNALLDCA SSFDYEDCFE WQSQCRAAYL D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)