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AT3G22990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.
Computational
Description (TAIR10)
LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 69 Blast hits to 69 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG30eggNOG:ENOG410XQMNEMBL:AB026655EMBL:AY072191
EMBL:AY084876EMBL:AY096422EMBL:CP002686EnsemblPlants:AT3G22990
EnsemblPlants:AT3G22990.1entrez:821873Gene3D:1.25.10.10GeneID:821873
Genevisible:Q9LS90GO:GO:0005634GO:GO:0009908GO:GO:0040008
GO:GO:0048366GO:GO:0048653Gramene:AT3G22990.1hmmpanther:PTHR12656
HOGENOM:HOG000242443InParanoid:Q9LS90InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024InterPro:IPR021906KEGG:ath:AT3G22990OMA:VMAQHRH
PANTHER:PTHR12656PaxDb:Q9LS90Pfam:Q9LS90Pfscan:PS50176
PhylomeDB:Q9LS90PRIDE:Q9LS90PRO:PR:Q9LS90PROSITE:PS50176
ProteinModelPortal:Q9LS90Proteomes:UP000006548RefSeq:NP_566721.1SUPFAM:SSF48371
TAIR:AT3G22990tair10-symbols:LFRUniGene:At.37780UniProt:Q9LS90
Coordinates (TAIR10) chr3:+:8164015..8166145
Molecular Weight (calculated) 50115.20 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.09
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKRELGKSG GNSGGSSGPP AKRGRPFGST SANSAAAAAA AAAADAMSPS ALLGPSLLVH NSFVEQNNRR IVLALQSGLK SEVTWALNTL TLLSFKEKED
101: IRRDVMPLAK IAGLLDALLL IIDDWRDIAL PKDLTRGTRV RTLGTNASVT GFGNEYDALA SIQPPGSGIG SSAAEALGKK STGKHQSSQW WMEEDGLFNL
201: DDEGRSEKQM CAIAASNVIR NFSFMPDNEV VMAQHRHCLE TVFQCIHDHM TEDEELVTNS LETIVNLAHL MDLRIFSSLK QSYININEKK AVQAVVGILN
301: SSVKAWNCAA AELLGRLIIN PDNEPFISPL IPQIHKRLID LLSIQAVDAQ AAAVGALYNL VEVNMDCRLK LASERWAVDR LLKVIKTPHP VPEVCRKAAM
401: ILENLVSEPQ NRGLLLAYEN AFAELLFQEG KYSDSFARIL YELTARSNSR VASARGIWGM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)