AT3G20270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.331 peroxisome 0.327 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lipid-binding serum glycoprotein family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), F-box domain, Skp2-like (InterPro:IPR022364), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT1G04970.1); Has 490 Blast hits to 486 proteins in 66 species: Archae - 2; Bacteria - 0; Metazoa - 380; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7067779..7070866 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80552.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 722 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRSKEENVA PTMKDDSPFG KLTEDLLIEI FIRIPITNWE QVSCVRKQWA NLFRGECLWL AALNRAYPLA SKTKSWIGPI RQGLSKRRYV ALYISRNILG 101: VDDTDIDEML GHIYVFLNDQ LQLSTMPASG ILHGTLIDQL IVCGQSKEEA GELATKIWLA LLDNLEDTKH TFTVLKSIAQ EYDGFLPYPY SRPIKVQWKV 201: FEKLFVDFRD LLDHSEYCDL IGIAKNKFQT IPYFSYPSTL FFFLEMALMK VMTILVLFVS VSSTLAQSNN GGHISIIVSE TGLEFAKDYL IKKVITTTLP 301: LQLPDIENKV KIPLIGKVRM GLSNIQIDAV HVQSSKMETR KDGIILSVLG ATANLSMDWS YTYRASFFEI SDHGDASVEV KGMNVRITAT LVNDNGSLKI 401: ASRENDCTVK NIDIHINGGA SWLYQGVVDA FQKMIISTVE KTVSTKIVEK MKKLDSFLQS LPKQRKIDDS AAVNLTFTGN PVLGNSSVEV DINGLFMPKG 501: DDIKVAGSRS SSFFGGVNKR MVTISVEEGV FNSATLVYFN AKVMHLVMEE TKNGSILSTS DWKLILPELY KHYPDNKMVL NMSVTSPPAV KITENGIDAT 601: IQLDIAFDVQ DSGENLSVAR LSTILSVACS TEIVKNNLIG SLRLNDFNAT MKWSKIGEFQ TNYVQAATSR ILEALFLPYV NTRLKRGFPL PIPGDFTIKN 701: IKIVYVNSGI LVCTDIGTST NQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)