AT3G19870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6907481..6911115 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122286.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||||||
| Length | 1090 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTTTTPEKTP ARPLSIQDWD VLIDDFRDAG APRDWFTSVF QIDSLVDFAL SSLLKKDFPT PVKLSILVFL DEFSPILFDN CGSDTFDRFI DVLRTIVQSP 0101: TDGSSGLKEQ AMVSFTSVLV SIDSFSVGHV EAVVDLLLAL VNRPNHGFDR QARAIASERT HAVQAYLLLF TTIVYNVVNQ KLKVSLLSTS VPLVPFNAPN 0201: WMRDESSIMS QGQGLGPDQK ELRRTLAFML ESPYLFTSCA MMEFMGMVVP LASALELQAS MLKVQFLGMI YSFDPMLCHV VLLMYSRFPD AFEGQEKEIM 0301: RRLMLFSKET QIYLVFRLLA LHWLMGLLNK HMLSGELEKR TSVLEMGQKF HPVVFDPLAL KALKLDLLVQ CSVSSNALSG GDNSKSAGDL LQDCLVSVSD 0401: FKWLPPWSSE TELAFRTLHK FLICASTHSD SDPSTTRILM ESSLFQNVQG LLVDMTLEFQ ILVPVIVAFI ERLIHCHKHQ WLGERFLQIV DENLLPKLKK 0501: KNLLTAYFPL FHRIAENDTI PPSRLIELLT KFVISLVEKR GLDVGLKLWD QGTEVLGICR TLMSHHKSSR LFLGLSRLLS LTCLYFPDLE VRDNARIYLR 0601: MLVCIPGQRI KNILKPADAV TPSTHSSTFF SVQSPRFRHD PSKSRNLSSY IHLERVTPLL VKQSWSLSLP SLSVGTDGYS IIENKIQVDE VEPDGSQELQ 0701: ILPEARRIES GKPTLRVMDS KIAEILERLR RYFSVIPDFK HMPGIKVRIT CTLRLDAEPY SSIWGSETQK IDLEKVDSPP AIFATVLKFS SSAPYGSIPS 0801: CRIPFLLGEP HWNSNVPNEE VSLDIVVVEN TLKEEEKDGL RGAPVTVELE PREPTPGLVE VSMEANAENG QMIQGKLESV PVGIEDMFLK ALAPPDEPED 0901: TIPSYYSDLF NALWEVCGSS SSTAHETFAL KGGKMAAAVS GTRSVKLLEV PAETVIQATE LRLAPFVVAI SGEQLVNIVR DGGIIENIVW KEEEEEQGDH 1001: TNADQPSSSS VGLNRGPLRL TYIGYGDDQE VPMTRSRGKM GTIKMLMFLP PRYHLMFEME VGQGSTLVHI RTDYWPCLAY VDDYLEALFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)