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AT3G19470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.941
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G22770.1); Has 1361 Blast hits to 1292 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AB025624EMBL:AK228280EMBL:AY086641EMBL:BT006465
EMBL:CP002686EnsemblPlants:AT3G19470EnsemblPlants:AT3G19470.1EnsemblPlants:AT3G19470.2
entrez:821481GeneID:821481Genevisible:Q8LCE9Gramene:AT3G19470.1
Gramene:AT3G19470.2hmmpanther:PTHR32133hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505
InParanoid:Q8LCE9InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451
KEGG:ath:AT3G19470OMA:ILRGITCPaxDb:Q8LCE9Pfam:PF07734
Pfam:Q8LCE9Pfscan:PS50181PhylomeDB:Q8LCE9PRIDE:Q8LCE9
PRO:PR:Q8LCE9PROSITE:PS50181ProteinModelPortal:Q8LCE9Proteomes:UP000006548
RefSeq:NP_001030727.1RefSeq:NP_566636.1SMR:Q8LCE9SUPFAM:SSF81383
TAIR:AT3G19470TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.38401
UniProt:Q8LCE9
Coordinates (TAIR10) chr3:+:6749766..6750914
Molecular Weight (calculated) 44042.60 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.15
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MYNLPRDLPE EVLCRIPLTS LRPVRSTCKK WSTLSKCGSF AKKHLAQAKV LADAKEFMVV LMMNFRVYLM RVNLQNNVVE SSSSSSSSSS SCIKREAKLI
101: SLGDEEADIS QVFHCDGLLL CISITESKTR LVVWNPYWGH TRLFEPTHQF NKFDSYSYAL GYDKSRKSHK ILRGITCLDP FKIYDFNSDL WRDLDVTPEW
201: HLWQMLHGVS LKGNAYWFAR ENYTETMDTD HFFLLCFDFT SETFGPPLPL PFEFAVSEDT MSVSSVREEQ LVVLYQPWDY LQLDIWVTSK IEPNAVSWNS
301: KVFLSVSLKQ LVSPQFQLTF GSFFIDEEKK VAVVFDKDYD NKRNIAYIFG VDGSFKAVDL GDSDRKCFPL VCSYVPSLVQ LN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)