suba logo
AT3G16410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.889
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nitrile specifier protein 4
Curator
Summary (TAIR10)
Encodes a nitrile-specifier protein NSP4. NSP4 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational
Description (TAIR10)
nitrile specifier protein 4 (NSP4); CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 1 (TAIR:AT3G16400.2); Has 13279 Blast hits to 7146 proteins in 431 species: Archae - 15; Bacteria - 460; Metazoa - 7495; Fungi - 707; Plants - 3102; Viruses - 40; Other Eukaryotes - 1460 (source: NCBI BLink).
Protein Annotations
BioGrid:6222eggNOG:ENOG410IEDYeggNOG:ENOG410Y2DFEMBL:AC001645
EMBL:AK228139EMBL:AP000373EMBL:BT023445EMBL:CP002686
EnsemblPlants:AT3G16410EnsemblPlants:AT3G16410.1entrez:820888Gene3D:2.100.10.30
Gene3D:2.120.10.80GeneID:820888Genevisible:O04316GO:GO:0009506
GO:GO:0019762GO:GO:0030246GO:GO:0080028Gramene:AT3G16410.1
gramene_pathway:1.1.1.-gramene_pathway:2.7.7.-gramene_pathway:PWY-5267gramene_pathway:PWYQT-4476
hmmpanther:PTHR23244hmmpanther:PTHR23244:SF208HOGENOM:HOG000217506InParanoid:O04316
InterPro:IPR001229InterPro:IPR006652InterPro:IPR015915KEGG:ath:AT3G16410
PaxDb:O04316Pfam:O04316Pfam:PF01344Pfam:PF01419
Pfam:PF13415Pfscan:PS51752PhylomeDB:O04316PRIDE:O04316
PRO:PR:O04316PROSITE:PS51752ProteinModelPortal:O04316Proteomes:UP000006548
RefSeq:NP_188262.1SMART:SM00612SMART:SM00915SMR:O04316
STRING:3702.AT3G16410.1SUPFAM:0052715SUPFAM:SSF51101TAIR:AT3G16410
tair10-symbols:NSP4UniGene:At.22512UniGene:At.47269UniProt:O04316
Coordinates (TAIR10) chr3:+:5572145..5574359
Molecular Weight (calculated) 67608.00 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.36
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQKVEAQGG NGGNQWDDGS EYDAVTKIQV AAGGNGIEYV KFTYVKNGQT EEAPLRGVKG RSFEADPFVI NHPEEHLVSV EGRYNPEGLI LGLTFKSNKK
101: TSDLIGYEDG TPFTLQVQDK KIVGFYGFAG NNLHSLGAYF APLTNVTPLN AKKLEAKGGD TGDIWDDGVY DNVRKVYVGQ AQYGIAFVKF EYVNGSQVVV
201: GDEHGKKTEL GVEEFEIDAD DYIVYVEGYR EKVNGMTSEM ITFLSFKTYK GKTSQPIEQR PGIKFVLQGG KIVGFHGRST DVLDSLGAYI SLSPTPNLHG
301: KWTKVDENGD GPGLRCSHDI AQVGNKIYSF GGEFTPNQPI DKHLYVFDIE SRTWSISPAT GDIPTLSCLG VCMVSIGSTL YVFGGRDASR QYNGFYSFDT
401: TTNEWKLLTP VEEGPTPRSF HSMAADEENV YVFGGVSATA RLNTLDSYNI VDKKWFHCST PGDSLTARGG AGLEVVQGKV WVVYGFNGCE VDDVHYYDPV
501: QDKWTQVETF GVRPSERSVF ASAALGKHIV IFGGEIAMDP LAHVGPGQLT DGTFALDTET LQWERLDKFG GEEETPSSRG WTASTTATIG GKKGLVMHGG
601: KAPTNDRFDD LFFYGIDSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)