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AT3G15200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 26696 Blast hits to 9471 proteins in 249 species: Archae - 1; Bacteria - 11; Metazoa - 102; Fungi - 194; Plants - 25787; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AP001299EMBL:CP002686
EnsemblPlants:AT3G15200EnsemblPlants:AT3G15200.1entrez:820751Gene3D:1.25.40.10
GeneID:820751Genevisible:Q9LIL5GO:GO:0022626Gramene:AT3G15200.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF399HOGENOM:HOG000237501InParanoid:Q9LIL5
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G15200ncoils:Coil
OMA:KGMVPEPPaxDb:Q9LIL5Pfam:PF01535Pfam:PF13041
Pfam:Q9LIL5Pfscan:PS51375PhylomeDB:Q9LIL5PRIDE:Q9LIL5
PRO:PR:Q9LIL5PROSITE:PS51375ProteinModelPortal:Q9LIL5Proteomes:UP000006548
RefSeq:NP_188138.1SMR:Q9LIL5STRING:3702.AT3G15200.1SUPFAM:SSF48452
TAIR:AT3G15200TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.21189
UniGene:At.66474UniProt:Q9LIL5
Coordinates (TAIR10) chr3:-:5117489..5119060
Molecular Weight (calculated) 61082.90 Da
IEP (calculated) 9.02
GRAVY (calculated) -0.53
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGKNKIEIL FQLQSALSRR RISSLVDFRR VFPPETPNHK NNITLSRFHF LGTHFLHSLG APDKFPNRFN DDKDKQSALD VHNIIKHHRG SSPEKIKRIL
101: DKCGIDLTEE LVLEVVNRNR SDWKPAYILS QLVVKQSVHL SSSMLYNEIL DVLGKMRRFE EFHQVFDEMS KRDGFVNEKT YEVLLNRYAA AHKVDEAVGV
201: FERRKEFGID DDLVAFHGLL MWLCRYKHVE FAETLFCSRR REFGCDIKAM NMILNGWCVL GNVHEAKRFW KDIIASKCRP DVVSYGTMIN ALTKKGKLGK
301: AMELYRAMWD TRRNPDVKIC NNVIDALCFK KRIPEALEVF REISEKGPDP NVVTYNSLLK HLCKIRRTEK VWELVEEMEL KGGSCSPNDV TFSYLLKYSQ
401: RSKDVDIVLE RMAKNKCEMT SDLYNLMFRL YVQWDKEEKV REIWSEMERS GLGPDQRTYT IRIHGLHTKG KIGEALSYFQ EMMSKGMVPE PRTEMLLNQN
501: KTKPRVEDKM LRSNLTSEES ESD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)