AT1G22830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8076921..8079032 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79319.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 703 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSSPSRSIL RGLTVSEICK FIPQSWKQLP RPISETSKTH DDESVPQVLF NSFRHCISHG QLYEAFRTFS LLRYQSGSHE FVLYSSASLL STCVGFNEFV 101: PGQQLHAHCI SSGLEFDSVL VPKLVTFYSA FNLLDEAQTI TENSEILHPL PWNVLIGSYI RNKRFQESVS VYKRMMSKGI RADEFTYPSV IKACAALLDF 201: AYGRVVHGSI EVSSHRCNLY VCNALISMYK RFGKVDVARR LFDRMSERDA VSWNAIINCY TSEEKLGEAF KLLDRMYLSG VEASIVTWNT IAGGCLEAGN 301: YIGALNCVVG MRNCNVRIGS VAMINGLKAC SHIGALKWGK VFHCLVIRSC SFSHDIDNVR NSLITMYSRC SDLRHAFIVF QQVEANSLST WNSIISGFAY 401: NERSEETSFL LKEMLLSGFH PNHITLASIL PLFARVGNLQ HGKEFHCYIL RRQSYKDCLI LWNSLVDMYA KSGEIIAAKR VFDSMRKRDK VTYTSLIDGY 501: GRLGKGEVAL AWFKDMDRSG IKPDHVTMVA VLSACSHSNL VREGHWLFTK MEHVFGIRLR LEHYSCMVDL YCRAGYLDKA RDIFHTIPYE PSSAMCATLL 601: KACLIHGNTN IGEWAADKLL LETKPEHLGH YMLLADMYAV TGSWSKLVTV KTLLSDLGVQ KAHEFALMET DSELDGENNK PMNDDSVINQ EQSSDEERLV 701: EVG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)