AT3G14160.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : 2-oxoglutarate-dependent dioxygenase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14140.1); Has 1267 Blast hits to 1266 proteins in 595 species: Archae - 0; Bacteria - 933; Metazoa - 94; Fungi - 54; Plants - 83; Viruses - 2; Other Eukaryotes - 101 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:4693495..4695198 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49788.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNHSEARGSG GHKGYRGRSQ ASEQWVPVAA DDKSLEDSSG NRVRGSQGKG RSRTSWSPRN SYGRGNDEHS PVQAYVNKSN VGFVEKGVQQ DRKSLEDGIG 101: STKQPDDGAA AGDNKAVLQS KSTNVSGGSF VSSECEDKDG AKMYCDLVNR VNDVTLSCQE SVSSTVVQKV ELSSVEDQKS APKADGAGNS SNESSTRHFD 201: IFLEKKGIVL KPNLLVLSRE KKKAAKGYSG TVIRPGMVLL KNYLSINDQV MIVNKCRRLG LGEGGFYQPG YRDEAKLHLK MMCLGKNWDP ETSRYGETRP 301: FDGSTAPRIP AEFNQFVEKA VKESQSLAAS NSKQTKGGDE IPFMLPDICI VNFYSSTGRL GLHQDKDESE NSIRKGLPVV SFSIGDSAEF LYGDQRDEDK 401: AETLTLESGD VLLFGGRSRK VFHGVRSIRK DTAPKALLQE TSLRPGRLNL TFRQY |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)