suba logo
AT3G12220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 16
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 16 (scpl16); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 14 (TAIR:AT3G12230.1); Has 3960 Blast hits to 3875 proteins in 462 species: Archae - 0; Bacteria - 498; Metazoa - 629; Fungi - 839; Plants - 1565; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12220-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC069472EMBL:AP002047EMBL:CP002686EnsemblPlants:AT3G12220
EnsemblPlants:AT3G12220.1entrez:820402ESTHER:arath-SCP16Gene3D:3.40.50.1820
GeneID:820402Genevisible:Q9C7D4GO:GO:0004180GO:GO:0005576
GO:GO:0016747GO:GO:0019748Gramene:AT3G12220.1hmmpanther:PTHR11802
hmmpanther:PTHR11802:SF29HOGENOM:HOG000198297InParanoid:Q9C7D4InterPro:IPR001563
InterPro:IPR029058iPTMnet:Q9C7D4KEGG:ath:AT3G12220KO:K16296
MEROPS:S10.A17OMA:ISNGNCIPANTHER:PTHR11802PaxDb:Q9C7D4
Pfam:PF00450Pfam:Q9C7D4PhylomeDB:Q9C7D4PRIDE:Q9C7D4
PRINTS:PR00724PRO:PR:Q9C7D4ProteinModelPortal:Q9C7D4Proteomes:UP000006548
RefSeq:NP_566414.3SMR:Q9C7D4STRING:3702.AT3G12220.1SUPFAM:SSF53474
TAIR:AT3G12220tair10-symbols:scpl16UniGene:At.39625UniProt:Q9C7D4
Coordinates (TAIR10) chr3:-:3896531..3898915
Molecular Weight (calculated) 49239.60 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.31
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSWIPKLLL LQLVLLLTKH ADSSSIIKYL PGFEGPLPFE LETGYIGVGE EDEDQMFYYF IKSESNPKTD PLLLWLSGGP GCSSFTGLIY ENGPLGFKVE
101: AYNGSIPTLV STTYSWTKVA NIIYLDQPVG TGFSYSRNPL ADIPSDTGSA KRVDEFLRKW LTKHPEYFSN PFYAGGNSYS GKMVPVIVQE ISNGNCIYGK
201: PQIRLQGYVL GSPVTDYDLD RNSRIQFAHG MALISNELYE SMKRTCGGNY IFVDPLNTEC LELIKDYDNC VSGIYENLIL VPKCDLTSPD CHSYRSMLSD
301: YWANNESVRR ALKVVEGTTG RWERCKWTLQ NNKDIKSSIP YHKKNSIQGY RSLIFSGDHD MLTPYVGTQD WIRSLNYSII DKWRPWMILD QVAGYTTTYA
401: NKMTFATVKG GGHTLDYKPD ENSILFKRWI SGQLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)