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AT3G11040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 0.755
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family 85
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family 85 ; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT5G05460.1); Has 486 Blast hits to 477 proteins in 213 species: Archae - 0; Bacteria - 256; Metazoa - 108; Fungi - 38; Plants - 49; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G11040-MONOMERCAZy:GH85EC:3.2.1.96eggNOG:COG4724
eggNOG:KOG2331EMBL:AC009991EMBL:CP002686EnsemblPlants:AT3G11040
EnsemblPlants:AT3G11040.1entrez:820275Gene3D:3.20.20.80GeneID:820275
Genevisible:Q9SRL4GO:GO:0005737GO:GO:0005829GO:GO:0006491
GO:GO:0006517GO:GO:0033925Gramene:AT3G11040.1hmmpanther:PTHR13246
hmmpanther:PTHR13246:SF1HOGENOM:HOG000241368InterPro:IPR005201InterPro:IPR013781
InterPro:IPR017853InterPro:IPR032979KEGG:ath:AT3G11040KO:K01227
OMA:TCKEMLAPANTHER:PTHR13246PaxDb:Q9SRL4Pfam:PF03644
Pfam:Q9SRL4PhylomeDB:Q9SRL4PRO:PR:Q9SRL4ProteinModelPortal:Q9SRL4
Proteomes:UP000006548RefSeq:NP_187715.1SMR:Q9SRL4STRING:3702.AT3G11040.1
SUPFAM:SSF51445TAIR:AT3G11040UniGene:At.53263UniProt:Q9SRL4
Coordinates (TAIR10) chr3:+:3460143..3463312
Molecular Weight (calculated) 79328.60 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.28
Length 701 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKSNDDDVA QSEAVPLLDL VKPSLPISFP IKALQDLKSR SYFDSFHFQF NRSTVPFRRN SDCLPNRPRV LVCHDMKGGY VDDKWVQGCE NEAGFAIWHW
101: YLMDIFVYFS HSLVTIPPPC WTNTAHRHGV KVLGTFITEW DEGKATCKEM LATKESAQMY AERLAELATA LGFDGWLINI ENDIDEEQIP NMKEFVSHLK
201: KVLHLSTPGA LVIWYDSVTV RGNLQWQDQL TELNKPFFDL CDGIFMNYTW KESYPNLSAE VAGDRKFDVY MGIDVFGRGS FGGGQWTVNA ALDLLKRNNV
301: SAAIFAPGWV YETAQPPNFH TAQNKWWSLV EKSWGIVQTY PQVLPFYSDF NQGFGYHVSL EGRQLSDSPW YNISCQSLQP LLEFNEDNKD IIQVTVDQEG
401: KNVFDFSEQH LNNYYEYDSA REASFNGGGN IVFRGKLKGD AYFTTRLFKP HLQLSSSPIT ISYSVKSDET SNLGILLSFS SPSLETKSIL VAPEDPIRRF
501: DDMSLQCLTT SVQTVSEWTV HEASLVMDGH TLTEISAFCY RPENSTKSAE FVALLGHISV KDHVQNQQNP EILLPASSWV IEAHNVELVP GNSSSKILRV
601: KLEWRQKDLE DSAFTRYNVY AENVKSTDLR PRKVLEKPKS ETVLLGIAHV PAYYVAELVV ESDVKAVRFM VQACGEDASL GKLDEALNLL VDLEGLSVNH
701: D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)