AT3G06455.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ubiquitin family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G01000.1); Has 8324 Blast hits to 4012 proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa - 3789; Fungi - 883; Plants - 2106; Viruses - 164; Other Eukaryotes - 1382 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:1980885..1982055 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37734.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADQSCKPLQ FFVRLLDGKS VTLTFSSPIA CGEQIKQRIF EQTKIPTHLQ RLISGGFQIP GASAISQSDT TMNLVLSLRG GKGGLGSLLR NVVMKAGQKK 101: TNNFDSCVGD GATQKNVNKY KGGSDKCILA VHLALNETFK NGNKRKGKKM GTAESEKSKR IKIWNGKRAV EDSDSDDSSD EEDEKSVVGG QVDSDHKDTD 201: ESSGSVLDGS HDGENDFVVH QSSDVVKGEI TVVQRINEEK MDDFAVADAM DQLEKVEKSS GNDDFVVKRG GTAKERVCCK PVEPLNFAEF KAATDMEVLG 301: MERLKTELQS RGLKCRGTLR ERAARLFLLK STPLDKLPKK LLAKK |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)