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AT3G04700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1685)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G04710.3); Has 200 Blast hits to 200 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011437EMBL:BT025165
EMBL:CP002686EnsemblPlants:AT3G04700EnsemblPlants:AT3G04700.1entrez:819628
GeneID:819628Gramene:AT3G04700.1hmmpanther:PTHR31865hmmpanther:PTHR31865:SF3
HOGENOM:HOG000239524InterPro:IPR012881KEGG:ath:AT3G04700Pfam:PF07939
PhylomeDB:Q9SR04Proteomes:UP000006548RefSeq:NP_187121.1STRING:3702.AT3G04700.1
TAIR:AT3G04700UniGene:At.40792UniProt:Q9SR04
Coordinates (TAIR10) chr3:+:1276948..1277607
Molecular Weight (calculated) 21287.60 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.51
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRRREGLTL PIIKPALPEV RSAATTPVAS QKPKHRLSKQ LSMCETPRDV AWERRRRQMI MIQEKKLLHK GASDNLCIQA NLTDEDLNEL KGSIELGFGF
101: NEEAGQKLCN TLPALDLYFA VNRQLSPLPS PSSSRSSSAS ASTFSYSIPC SPKKTDSDSV KILCPGDDPQ QMKQRLRHWA QAVACSVMQS Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)