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AT3G04630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WVD2-like 1
Curator
Summary (TAIR10)
Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.
Computational
Description (TAIR10)
WVD2-like 1 (WDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G28646.2); Has 555 Blast hits to 553 proteins in 81 species: Archae - 0; Bacteria - 12; Metazoa - 128; Fungi - 23; Plants - 316; Viruses - 4; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G04630EnsemblPlants:AT3G04630.1entrez:819621hmmpanther:PTHR31358
hmmpanther:PTHR31358:SF4ncoils:CoilPfam:PF06886tair10-symbols:WDL1
Coordinates (TAIR10) chr3:+:1259231..1260652
Molecular Weight (calculated) 32079.60 Da
IEP (calculated) 10.10
GRAVY (calculated) -1.14
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MGREVVEVLM DRNADVSSAR VHVAPKIAAE ETDEEFEVKE CTEEKSLSEN APNVGSAERV GAQKSPKTRN GNAKVSKQQD APLLAVRKPL QPENKKHIDD
101: EDNCSIASSV ATSMRMGKSG LTYGSAPTFR SAQRAEKRKE YYQKLEEKNQ ALEAERNELE QRQKDEQEAA LKQLRKNLKF KAKPVPNFYY EAPPAKPELK
201: KLPLTRPKSP KLILSRRKSF SDAVSSSSRE EILKTVSNRN RHSTGTVQNK DDDHRNKNTN AAHDSPRVRS GKGKSGLKPV NESSEEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)