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AT3G03980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.556
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G04000.1); Has 125329 Blast hits to 125098 proteins in 3700 species: Archae - 987; Bacteria - 82672; Metazoa - 6160; Fungi - 6506; Plants - 2912; Viruses - 12; Other Eukaryotes - 26080 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G03980-MONOMEReggNOG:COG1028eggNOG:KOG0725EMBL:AC011698
EMBL:CP002686EnsemblPlants:AT3G03980EnsemblPlants:AT3G03980.1entrez:819553
Gene3D:3.40.50.720GeneID:819553GO:GO:0016491Gramene:AT3G03980.1
hmmpanther:PTHR24322hmmpanther:PTHR24322:SF429InterPro:IPR002347InterPro:IPR016040
InterPro:IPR020904KEGG:ath:AT3G03980KO:K00059OMA:NMLADSW
PANTHER:PTHR24322Pfam:PF00106PhylomeDB:Q9SQR4PRINTS:PR00080
PRINTS:PR00081PROSITE:PS00061Proteomes:UP000006548Reactome:R-ATH-5661270
RefSeq:NP_187048.1scanprosite:PS00061SMR:Q9SQR4STRING:3702.AT3G03980.1
SUPFAM:SSF51735TAIR:AT3G03980UniGene:At.18593UniProt:Q9SQR4
Coordinates (TAIR10) chr3:+:1031786..1033081
Molecular Weight (calculated) 28147.70 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.07
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTHSSISQP PLPLAGRVAI VTGSSRGIGR AIAIHLAELG ARIVINYTSK AADAERVASE INDFPVREEI TGKGPRAIVV QANVSEPSQV KSMFDAAESA
101: FEAPVHILVN SAGILDPKYP TIADTSVEDF DHTFSVNTKG AFLCSKEAAN RLKQGGGGRI ILLTSSQTRS LKPGFGAYAA SKAAVETMVK ILAKELKGTG
201: ITANCVAPGP IATEMFFDGK TPELVEKIAA ESPFGRVGEA KDVVPLVGFL AGDGGEWVNG QIIPVNGGYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)