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AT3G03010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.932
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidyl-tRNA hydrolase II (PTH2) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 884 Blast hits to 884 proteins in 331 species: Archae - 257; Bacteria - 13; Metazoa - 196; Fungi - 135; Plants - 86; Viruses - 8; Other Eukaryotes - 189 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G03010-MONOMERBioCyc:ARA:GQT-849-MONOMEReggNOG:COG1990eggNOG:KOG3282
EMBL:AC018363EMBL:AK317344EMBL:CP002686EnsemblPlants:AT3G03010
EnsemblPlants:AT3G03010.1EnsemblPlants:AT3G03010.2entrez:821157Gene3D:3.40.1490.10
GeneID:821157GO:GO:0004045Gramene:AT3G03010.1Gramene:AT3G03010.2
hmmpanther:PTHR12649hmmpanther:PTHR12649:SF11HOGENOM:HOG000227349InterPro:IPR002833
InterPro:IPR023476KEGG:ath:AT3G03010KO:K04794OMA:RTDIGMG
Pfam:PF01981PhylomeDB:Q9M8U2Proteomes:UP000006548RefSeq:NP_001030627.1
RefSeq:NP_186951.1SMR:Q9M8U2STRING:3702.AT3G03010.1SUPFAM:SSF102462
TAIR:AT3G03010TIGRfam:TIGR00283TIGRFAMs:TIGR00283TMHMM:TMhelix
UniGene:At.43174UniProt:Q9M8U2
Coordinates (TAIR10) chr3:-:678982..680137
Molecular Weight (calculated) 19852.70 Da
IEP (calculated) 10.45
GRAVY (calculated) -0.07
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLVWLLSVL LVGAALGYYI STLRQTRRIF LSSKSVAIDA GSSGNKKTKS KEPLEIEKLA DFRKNFKMVL VVRNDLKMGK GKIAAQCSHA TLGLYKKLLQ
101: RAPKALNRWE YCAQPKVVVK IESEEEMLVL QERAKTLKLP THITIDAGKT QIAPNSRTVM AILGPVDNVD EVTGGLKLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)