AT3G03010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.932 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Peptidyl-tRNA hydrolase II (PTH2) family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 884 Blast hits to 884 proteins in 331 species: Archae - 257; Bacteria - 13; Metazoa - 196; Fungi - 135; Plants - 86; Viruses - 8; Other Eukaryotes - 189 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:678982..680137 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 19852.70 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.45 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||
Length | 179 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDLVWLLSVL LVGAALGYYI STLRQTRRIF LSSKSVAIDA GSSGNKKTKS KEPLEIEKLA DFRKNFKMVL VVRNDLKMGK GKIAAQCSHA TLGLYKKLLQ 101: RAPKALNRWE YCAQPKVVVK IESEEEMLVL QERAKTLKLP THITIDAGKT QIAPNSRTVM AILGPVDNVD EVTGGLKLM |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)