suba logo
AT3G02875.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase M20/M25/M40 family protein
Curator
Summary (TAIR10)
Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors.
Computational
Description (TAIR10)
IAA-LEUCINE RESISTANT 1 (ILR1); FUNCTIONS IN: metallopeptidase activity, IAA-Leu conjugate hydrolase activity, IAA-Phe conjugate hydrolase activity; INVOLVED IN: proteolysis, auxin metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20, dimerisation (InterPro:IPR011650), Peptidase M20D, amidohydrolase (InterPro:IPR010168), Peptidase M20D, mername-AA028/carboxypeptidase Ss1 (InterPro:IPR017439); BEST Arabidopsis thaliana protein match is: IAA-leucine resistant (ILR)-like 2 (TAIR:AT5G56660.1); Has 13461 Blast hits to 13451 proteins in 1948 species: Archae - 137; Bacteria - 10103; Metazoa - 64; Fungi - 266; Plants - 279; Viruses - 0; Other Eukaryotes - 2612 (source: NCBI BLink).
Protein Annotations
EC:3.5.1.-eggNOG:COG1473eggNOG:ENOG410IIRPEMBL:AC018363
EMBL:AY054640EMBL:AY081499EMBL:CP002686EMBL:U23794
EnsemblPlants:AT3G02875EnsemblPlants:AT3G02875.1entrez:821199Gene3D:3.30.70.360
GeneID:821199Genevisible:P54968GO:GO:0005783GO:GO:0009850
GO:GO:0010210GO:GO:0010211Gramene:AT3G02875.1gramene_pathway:3.5.1.-
gramene_pathway:PWY-1822gramene_plant_reactome:1119580gramene_plant_reactome:6873774gramene_plant_reactome:6874739
hmmpanther:PTHR11014hmmpanther:PTHR11014:SF108HOGENOM:HOG000241403InParanoid:P54968
InterPro:IPR002933InterPro:IPR011650InterPro:IPR017439KEGG:ath:AT3G02875
KO:K14664MEROPS:M20.A02OMA:HMTWGLAPaxDb:P54968
Pfam:P54968Pfam:PF01546Pfam:PF07687PhylomeDB:P54968
PIRSF:PIRSF005962PRIDE:P54968PRO:PR:P54968ProteinModelPortal:P54968
Proteomes:UP000006548RefSeq:NP_186937.1SMR:P54968STRING:3702.AT3G02875.1
SUPFAM:SSF53187SUPFAM:SSF55031TAIR:AT3G02875tair10-symbols:ILR1
TIGRfam:TIGR01891TIGRFAMs:TIGR01891UniGene:At.18770UniProt:P54968
Coordinates (TAIR10) chr3:+:631993..633859
Molecular Weight (calculated) 48017.30 Da
IEP (calculated) 6.10
GRAVY (calculated) -0.10
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFSGSFFVI FVTFFFLPPL SSAGSYDSGS GLESLARGML HSAKDPEFFE WMRGIRRKIH ENPETGFQEF KTSQLVRDEL DSLGVKYKYP VAKTGVVAWI
101: GSCSKPVFGL RADMDALPLQ ELVEWESKSK VDGKMHACGH DTHVAMLLGA AKLLQTTKHL IKGTVKLVFQ PGEEGYAGAY EMLKDEILDD LDGILSVHVF
201: PSIPSGGIGS RPGTVLAGAG LFTVTVHGQG SHAATPHFSK DPVLAASSAV VALQQIVSRE LDPLEAGVVT VGYIEGGHAQ NVIPQSAKFG GTFRSLSNDG
301: LLFIQRRIKE ISEAQASVYR CKAEVNFEEK KPSLHPVMNN DEGLYEHGKK VAEAMIGKNN FHDFPVTMGG EDFSFFTQKT KAAIFVLGVK NETLGAGKPL
401: HSPYFFVDEE ALPVGAALHA AMAVSYLDEH GHSHEEEVKS EL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)