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AT3G01470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox 1
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.
Computational
Description (TAIR10)
homeobox 1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress, response to blue light, positive regulation of transcription, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 12515 Blast hits to 12478 proteins in 547 species: Archae - 0; Bacteria - 0; Metazoa - 9969; Fungi - 258; Plants - 2039; Viruses - 5; Other Eukaryotes - 244 (source: NCBI BLink).
Protein Annotations
BioGrid:6471eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC009325
EMBL:AY058188EMBL:AY098972EMBL:CP002686EMBL:M90416
EMBL:X58821EnsemblPlants:AT3G01470EnsemblPlants:AT3G01470.1entrez:821138
Gene3D:1.10.10.60GeneID:821138Genevisible:Q02283GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009637GO:GO:0009651
GO:GO:0009965GO:GO:0042803GO:GO:0043565GO:GO:0045893
Gramene:AT3G01470.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF136HOGENOM:HOG000006025
InParanoid:Q02283InterPro:IPR000047InterPro:IPR001356InterPro:IPR003106
InterPro:IPR009057InterPro:IPR017970KEGG:ath:AT3G01470KO:K09338
MINT:MINT-8060197ncoils:CoilOMA:QETANEPPaxDb:Q02283
Pfam:PF00046Pfam:PF02183Pfam:Q02283Pfscan:PS50071
PhylomeDB:Q02283PIR:S16325PRIDE:Q02283PRINTS:PR00031
PRO:PR:Q02283PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:Q02283
Proteomes:UP000006548RefSeq:NP_186796.1scanprosite:PS00027SMART:SM00389
SMR:Q02283STRING:3702.AT3G01470.1SUPFAM:SSF46689TAIR:AT3G01470
tair10-symbols:ATHB-1tair10-symbols:ATHB1tair10-symbols:HAT5tair10-symbols:HB-1
tair10-symbols:HD-ZIP-1UniGene:At.41275UniGene:At.47815UniProt:Q02283
Coordinates (TAIR10) chr3:-:182648..184034
Molecular Weight (calculated) 30934.70 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.82
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)