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AT2G48120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pale cress protein (PAC)
Curator
Summary (TAIR10)
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational
Description (TAIR10)
PALE CRESS (PAC); Has 504 Blast hits to 478 proteins in 108 species: Archae - 0; Bacteria - 11; Metazoa - 283; Fungi - 39; Plants - 50; Viruses - 8; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
BioGrid:4759eggNOG:ENOG410IHGEeggNOG:ENOG4111FTZEMBL:AC007166
EMBL:AK117768EMBL:AY086817EMBL:BT005304EMBL:CP002685
EMBL:L35241EMBL:X96480EMBL:X96482EnsemblPlants:AT2G48120
EnsemblPlants:AT2G48120.1entrez:819424GeneID:819424Genevisible:Q39089
GO:GO:0006351GO:GO:0006355GO:GO:0009501GO:GO:0009507
GO:GO:0009509GO:GO:0009513GO:GO:0009537GO:GO:0009658
GO:GO:0009965GO:GO:0010239GO:GO:0071482hmmpanther:PTHR37219
HOGENOM:HOG000241413InParanoid:Q39089IntAct:Q39089KEGG:ath:AT2G48120
ncoils:CoilOMA:CKKRMVDPaxDb:Q39089Pfam:Q39089
PhylomeDB:Q39089PIR:F84923PRIDE:Q39089PRO:PR:Q39089
ProteinModelPortal:Q39089Proteomes:UP000006548RefSeq:NP_001078079.1RefSeq:NP_182332.1
STRING:3702.AT2G48120.1TAIR:AT2G48120tair10-symbols:PACUniGene:At.13480
UniProt:Q39089
Coordinates (TAIR10) chr2:+:19679870..19681351
Molecular Weight (calculated) 36613.60 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.73
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATSLVLTC ASPLFSSPRV ISATKKLTTE LSISTAKFRR RCSGNNDEVL LEGMPPEYYD DEWQARQREK TKELRRMQRE EEEEEERKIE EYREIGTRLK
101: EFPEQDLRKA RKLVSSFIRA AEEVEERIEE AAEKGELDEL VLMIIWNRLD LARRDDEKDA IRSLDLLYRR VETEILKRQA SPAMKLLNDL LNMHDGFEDD
201: AWLKDCRKRM AETFPREDPF SILMPPGFDI DMHQGQLRPP IETETDNTLL RVDFVREVDA LLQEVRIEED ATTGSKGEGL DPEAIALKFK QQEKQRTIRQ
301: IEAILDLALN LKW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)