AT2G45730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic initiation factor 3 gamma subunit family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
eukaryotic initiation factor 3 gamma subunit family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic initiation factor 3, gamma subunit (InterPro:IPR007316), tRNA (adenine-N(1)-)-methyltransferase, non-catalytic TRM6 subunit (InterPro:IPR017423); Has 402 Blast hits to 378 proteins in 203 species: Archae - 0; Bacteria - 4; Metazoa - 118; Fungi - 152; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18836519..18839123 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49413.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.54 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELNKDQTVM SEDKKPQDPN PRFACEGCSV LLDINDGDRL VFARLSSGAI LKIGNKNYSL KPLIGAPFGS LFQVETGEDG SFLSRILPIK QESNSNNVMD 101: DSRDNREIVD NNEAQNLTGE EIEAMRREGA KGDEIIEALI ANSKTFDKKF QLSQEKYKLK KQKKYAPKLL LRRPFARSIC EAYFKKYPAR IGFLRVDALS 201: LLLTMANVTA YSDVLVVDMV GGLVTGAVAE RLGGTGYVCN TYKGSSPYPV EMVRMFNFSD KVLKRIVQSS INELSSAKTA STEGNNQQEG VCKAENNINE 301: TATSDVMVEE ISVTTEAGVV DIVVPESKII KAAKAGAKAS KETIEMWQEN GFSSLIMAAQ DQDPWIVAKD VLPLLSYSAP FAIYHQYLQP LATCMHKLQQ 401: GKMAINLQIT EPWLREYQVL PSRSHPHMQM SSFGGYVLSG IRISTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)