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AT2G44040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dihydrodipicolinate reductase, bacterial/plant
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dihydrodipicolinate reductase, bacterial/plant; FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: oxidation reduction, lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Dihydrodipicolinate reductase, C-terminal (InterPro:IPR022663), NAD(P)-binding domain (InterPro:IPR016040), Dihydrodipicolinate reductase, plant (InterPro:IPR011859), Dihydrodipicolinate reductase, bacterial/plant (InterPro:IPR011770), Dihydrodipicolinate reductase, N-terminal (InterPro:IPR000846); BEST Arabidopsis thaliana protein match is: Dihydrodipicolinate reductase, bacterial/plant (TAIR:AT3G59890.1); Has 3366 Blast hits to 3365 proteins in 1356 species: Archae - 124; Bacteria - 2714; Metazoa - 2; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G44040-MONOMERBioGrid:4345EC:1.17.1.8eggNOG:ENOG410IJJP
eggNOG:ENOG410XQCEEMBL:AC004005EMBL:AK118845EMBL:AY084299
EMBL:BT008540EMBL:CP002685EnsemblPlants:AT2G44040EnsemblPlants:AT2G44040.1
entrez:819009Gene3D:3.40.50.720GeneID:819009Genevisible:O80574
GO:GO:0008839GO:GO:0009089GO:GO:0009507GO:GO:0009570
GO:GO:0019877GO:GO:0070402Gramene:AT2G44040.1gramene_pathway:1.3.1.26
gramene_pathway:PWY-5097hmmpanther:PTHR20836hmmpanther:PTHR20836:SF0HOGENOM:HOG000265601
InParanoid:O80574IntAct:O80574InterPro:IPR000846InterPro:IPR011859
InterPro:IPR016040InterPro:IPR022663InterPro:IPR023940KEGG:00261+1.17.1.8
KEGG:00300+1.17.1.8KEGG:ath:AT2G44040KO:K00215OMA:RDPEEQV
PANTHER:PTHR20836PaxDb:O80574Pfam:O80574Pfam:PF01113
Pfam:PF05173PhylomeDB:O80574PIR:T00684PRIDE:O80574
PRO:PR:O80574ProteinModelPortal:O80574Proteomes:UP000006548RefSeq:NP_566006.1
SMR:O80574STRING:3702.AT2G44040.1SUPFAM:SSF51735TAIR:AT2G44040
TIGRfam:TIGR02130TIGRFAMs:TIGR02130UniGene:At.36804UniPathway:UPA00034
UniProt:O80574
Coordinates (TAIR10) chr2:-:18221985..18223998
Molecular Weight (calculated) 37552.30 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.03
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)